View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_6 (Length: 376)
Name: NF18905_low_6
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 56 - 376
Target Start/End: Complemental strand, 26153173 - 26152853
Alignment:
| Q |
56 |
cccttaaatcttcttgatatcactttaaattattaaatatgaaagtcactctttttataatccataataaacgtgctttgaaaaaatacagatagtttat |
155 |
Q |
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| T |
26153173 |
cccttaaatcttcttgatatcactttaaattattaaatatgaaagtcactctttttataatccataataaacgtgctttgaaaaaatacatatagtttat |
26153074 |
T |
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| Q |
156 |
agaagagactaacctcagggaaagaagtgagaaagccgcgagaggaagcgggggagacttcagcggtatagaccggggcaatcatgagagcatagccgat |
255 |
Q |
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| T |
26153073 |
agaagagattaacctcagggaaagaagtgagaaagccgcgagaggaagcgggggagacttcagcggtatagaccggggcaatcatgagagcatagccgat |
26152974 |
T |
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| Q |
256 |
gccaactccggcgacaaagcggccaaacatgaggaagttatagtttggtgagaaacccatgagtaaggctccgacgaagaaaatggcccccgcaaacacg |
355 |
Q |
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| T |
26152973 |
gccaactccggcaacaaaacgaccaaacatgaggaagttgtagtttggtgagaaacccatgagtaaggctccgacaaagaaaatggcccctgcaaacacg |
26152874 |
T |
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| Q |
356 |
atggtgtaacgacgaccaatc |
376 |
Q |
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| T |
26152873 |
atggtgtaacgacgaccaatc |
26152853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 339
Target Start/End: Complemental strand, 27319117 - 27318946
Alignment:
| Q |
168 |
cctcagggaaagaagtgagaaagccgcgagaggaagcgggggagacttcagcggtatagaccggggcaatcatgagagcatagccgatgccaactccggc |
267 |
Q |
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| T |
27319117 |
cctcaggcaaggaagtgaggaagccacgagatgaagttggggagacttcagaggtataaacaggagcaatcaagaaggcaaaccctatgccaacaccagc |
27319018 |
T |
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| Q |
268 |
gacaaagcggccaaacatgaggaagttatagtttggtgagaaacccatgagtaaggctccgacgaagaaaat |
339 |
Q |
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| T |
27319017 |
aaagaaacgaccaaacatgagaaatgcatagtttggagaaagtcccataagtacagctccgacgaagaaaat |
27318946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 54348360 - 54348272
Alignment:
| Q |
167 |
acctcagggaaagaagtgagaaagccgcgagaggaagcgggggagacttcagcggtatagaccggggcaatcatgagagcatagccgat |
255 |
Q |
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| T |
54348360 |
acctcggggaaggaggtgaggaagccgcgagaggaagcaggggagacttcggcggtgtagaccggggcgatcatgagagcgtagccgat |
54348272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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