View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18905_low_8 (Length: 334)
Name: NF18905_low_8
Description: NF18905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18905_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 2565579 - 2565895
Alignment:
| Q |
12 |
aaaggatcacaacaaaagtccaacaacccataatagagggttaacataagtcataaactaattaggcaagaaaaagataaagaaccacaatcataccaac |
111 |
Q |
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| T |
2565579 |
aaaggatcacaacaaaagtccaacaacccataatagagggttaacataagtcataaactaattaggcaagaaaaagataaagaaccacaatcataccaac |
2565678 |
T |
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| Q |
112 |
atgatactccacaaccaaaaagaacatggaaataaggatctttctggtaatgtaaagggagagttcaattattcactcgtaaaagctacaaagagacttt |
211 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2565679 |
atgatactccacaaccaaaaagaaaaaggaaataaggatctttctggcaatgtaaagggagagttcaattattcactcgtaaaagctacaaagagactct |
2565778 |
T |
|
| Q |
212 |
aatgacttacctaaaaaacacttttaagatgactgatatttttcaataa---------------tatccttttcaaggtgatatttaagttttttctaat |
296 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2565779 |
aatgacttacctaaaaatcacttttaagatgactgatatttttcaataaactcttttaatgcgctatccttttcaaggtgatatttaagttttttctaat |
2565878 |
T |
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| Q |
297 |
acacttctcgtacccaa |
313 |
Q |
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||||||||||||||||| |
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| T |
2565879 |
acacttctcgtacccaa |
2565895 |
T |
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