View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18906_low_1 (Length: 578)

Name: NF18906_low_1
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18906_low_1
NF18906_low_1
[»] chr3 (5 HSPs)
chr3 (1-336)||(3751730-3752065)
chr3 (380-539)||(3752065-3752224)
chr3 (252-291)||(10366644-10366683)
chr3 (252-291)||(24569102-24569141)
chr3 (250-306)||(40462371-40462427)
[»] chr4 (4 HSPs)
chr4 (363-484)||(25511341-25511462)
chr4 (252-291)||(42517646-42517685)
chr4 (252-291)||(51625157-51625196)
chr4 (250-290)||(462033-462073)
[»] chr1 (5 HSPs)
chr1 (363-484)||(31985212-31985333)
chr1 (250-313)||(6160462-6160532)
chr1 (252-291)||(26093468-26093507)
chr1 (252-292)||(4659830-4659870)
chr1 (243-291)||(8896328-8896376)
[»] scaffold0294 (1 HSPs)
scaffold0294 (252-291)||(17109-17148)
[»] chr7 (4 HSPs)
chr7 (252-291)||(5524461-5524500)
chr7 (252-291)||(28103814-28103853)
chr7 (252-291)||(44180286-44180325)
chr7 (250-291)||(16904460-16904501)
[»] chr6 (3 HSPs)
chr6 (252-291)||(31894211-31894250)
chr6 (252-290)||(23142742-23142780)
chr6 (250-291)||(1063602-1063643)
[»] chr5 (3 HSPs)
chr5 (252-291)||(2232073-2232112)
chr5 (252-291)||(40530224-40530263)
chr5 (250-291)||(38508185-38508226)
[»] chr2 (3 HSPs)
chr2 (252-291)||(26607968-26608007)
chr2 (226-281)||(45169249-45169304)
chr2 (30-72)||(7485935-7485977)
[»] chr8 (1 HSPs)
chr8 (23-72)||(16599087-16599136)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 3751730 - 3752065
Alignment:
Q  1 ggaaaaaagtgaaagactaattggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaattttcttggttatcttgaacttttaagatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751730 ggaaaaaagtgaaagactaattggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaattttcttggttatcttgaacttttaagatt 3751829  T
Q  101 aattgaacttttaaaactataattaaataagaataaaattttcttgcaaatgcaacaattaaaaaggattgaaggtagtatctctaatagttccataaac 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3751830 aattgaacttttaaaactacaattaaataagaataaaattttcttgcaaatgcaacaattaaaaaggattgaaagtagtatctctaatagttccataaac 3751929  T
Q  201 aatacttcagttgactcactgtacgtgtttcatttgagctttgcacaagttttaagaaaatgactaattgtgttgatttcattggtaaaatatttactaa 300  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |    
T  3751930 aatactccagttgactcactatacgtgtttcatttgagctttgcataagttttaaaaaaatgactaattgtgttgattttattagtaaaatatttactga 3752029  T
Q  301 aatactcttattatatcatagttttaaaactcggat 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  3752030 aatactcttattatatcatagttttaaaactcggat 3752065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 380 - 539
Target Start/End: Original strand, 3752065 - 3752224
Alignment:
Q  380 tatagttggatagagcatgcaattgaaccgtgatgaaccagtatgaaccggccggttttctgtcgaaccggggactcggtggcttttcaaccgaaccggt 479  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3752065 tatagttggatagggcatgcaattgaaccgtgacgaaccagtatgaaccggccggttttctgtcgaaccggggactcggtggcttttcaaccaaaccggt 3752164  T
Q  480 tttttacatggacgctggctgcaaaaatcaaagttcgggagagttgcattgcatcacact 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3752165 tttttacatggacgctggctgcaaaaatcaaagttcgggagagttgcattgcatcgcact 3752224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 10366644 - 10366683
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  10366644 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 10366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 24569102 - 24569141
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  24569102 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 24569141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 40462427 - 40462371
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaatatttactaaaatact 306  Q
    |||||||||||||| ||||||| ||||||||| || ||||||  || ||||||||||    
T  40462427 ttttaagaaaatgattaattgttttgatttcagtgataaaatcatttctaaaatact 40462371  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 25511462 - 25511341
Alignment:
Q  363 catgactggttcgagcttatagttggatagagcatgcaattgaaccgtgatgaaccagtatgaaccggccggttttctgtcgaaccggggactcggtggc 462  Q
    |||||| |||||||||  |||||||||| |   ||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||| ||||||||||     
T  25511462 catgaccggttcgagcagatagttggatcggatatgcaattgaaccgtgacgaaccggtatgaaccggccggtttcctgtcaaaccggtgactcggtggt 25511363  T
Q  463 ttttcaaccgaaccggtttttt 484  Q
    |||| || |  |||||||||||    
T  25511362 ttttaaatcagaccggtttttt 25511341  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 42517646 - 42517685
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  42517646 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 42517685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 51625196 - 51625157
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  51625196 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 51625157  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 462073 - 462033
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaa 290  Q
    |||||||||||||| ||||||| ||||||||| ||||||||    
T  462073 ttttaagaaaatgattaattgtattgatttcaatggtaaaa 462033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 484
Target Start/End: Original strand, 31985212 - 31985333
Alignment:
Q  363 catgactggttcgagcttatagttggatagagcatgcaattgaaccgtgatgaaccagtatgaaccggccggttttctgtcgaaccggggactcggtggc 462  Q
    |||||| |||||||||  |||||||||| |   ||||| ||||||||||| ||||| |||||||||||||||||| ||||| |||||| ||||||||||     
T  31985212 catgaccggttcgagcagatagttggatcggatatgcagttgaaccgtgacgaaccggtatgaaccggccggtttcctgtcaaaccggtgactcggtggt 31985311  T
Q  463 ttttcaaccgaaccggtttttt 484  Q
    |||| || |  |||||||||||    
T  31985312 ttttaaatcagaccggtttttt 31985333  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 6160462 - 6160532
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaa-------tatttactaaaatactcttatta 313  Q
    |||||||||||||| ||||||||||||||||| || |||||       |||||||||||||||||||||||    
T  6160462 ttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactcttatta 6160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 26093507 - 26093468
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  26093507 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 26093468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 4659870 - 4659830
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaata 292  Q
    |||||||||||| ||||||||||||||||| || |||||||    
T  4659870 ttaagaaaatgattaattgtgttgatttcaatgctaaaata 4659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 8896328 - 8896376
Alignment:
Q  243 gcacaagttttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||| ||| |||||||||||| | ||||||||||||||| |||||||||    
T  8896328 gcaccagtcttaagaaaatgattgattgtgttgatttcaatggtaaaat 8896376  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 17148 - 17109
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  17148 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 17109  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 5524500 - 5524461
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  5524500 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 5524461  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 28103853 - 28103814
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  28103853 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 28103814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 44180325 - 44180286
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  44180325 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 44180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 16904501 - 16904460
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  16904501 ttttaagaaaatgattaattgtgttgatttcaatagtaaaat 16904460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 31894211 - 31894250
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  31894211 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 31894250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 23142780 - 23142742
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaa 290  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  23142780 ttaagaaaatgattaattgtgttgatttcaatggtaaaa 23142742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 1063602 - 1063643
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  1063602 ttttaagaaaatgattaattgtgttgatttcaatgataaaat 1063643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 2232073 - 2232112
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  2232073 ttaagaaaatgaataattgtgttgatttcaatggtaaaat 2232112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 40530224 - 40530263
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  40530224 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 40530263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 38508185 - 38508226
Alignment:
Q  250 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||||| |||||||||| |||||| |||||||||    
T  38508185 ttttaagaaaatgattaattgtgttaatttcaatggtaaaat 38508226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 26607968 - 26608007
Alignment:
Q  252 ttaagaaaatgactaattgtgttgatttcattggtaaaat 291  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  26607968 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 45169304 - 45169249
Alignment:
Q  226 tgtttcatttgagctttgcacaagttttaagaaaatgactaattgtgttgatttca 281  Q
    |||||||||| ||||||||| |  |||||||||||| | |||||||||||||||||    
T  45169304 tgtttcatttaagctttgcatactttttaagaaaataattaattgtgttgatttca 45169249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 7485977 - 7485935
Alignment:
Q  30 gacttaaaacaattagagagatatgcaaaatatttagaaaatt 72  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||    
T  7485977 gacttaaaataattaaagagatatgcacaatatttagaaaatt 7485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 16599136 - 16599087
Alignment:
Q  23 ggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaatt 72  Q
    ||||| |||||||||| ||||| |||||| |||| |||||||||||||||    
T  16599136 ggaaattgacttaaaataattaaagagatgtgcacaatatttagaaaatt 16599087  T

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