View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18906_low_10 (Length: 220)

Name: NF18906_low_10
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18906_low_10
NF18906_low_10
[»] chr4 (12 HSPs)
chr4 (10-215)||(36465061-36465265)
chr4 (1-138)||(51356934-51357071)
chr4 (18-135)||(8819557-8819674)
chr4 (10-139)||(41039084-41039213)
chr4 (7-141)||(23626604-23626738)
chr4 (20-140)||(19841494-19841612)
chr4 (7-131)||(40572139-40572261)
chr4 (20-136)||(38951375-38951491)
chr4 (7-139)||(22278061-22278192)
chr4 (42-139)||(42555082-42555177)
chr4 (80-140)||(40715164-40715224)
chr4 (18-140)||(47223055-47223177)
[»] chr3 (9 HSPs)
chr3 (7-139)||(13825659-13825791)
chr3 (7-139)||(12148783-12148915)
chr3 (7-139)||(25874952-25875084)
chr3 (65-139)||(4127751-4127825)
chr3 (28-139)||(21287866-21287977)
chr3 (7-130)||(36584156-36584279)
chr3 (7-140)||(48251892-48252025)
chr3 (7-139)||(27926868-27927000)
chr3 (65-131)||(5294979-5295045)
[»] chr8 (8 HSPs)
chr8 (7-139)||(31005767-31005899)
chr8 (19-139)||(8227485-8227605)
chr8 (7-134)||(7987471-7987598)
chr8 (7-139)||(7968679-7968810)
chr8 (7-139)||(36583134-36583266)
chr8 (28-136)||(11481187-11481295)
chr8 (10-106)||(9765250-9765346)
chr8 (101-139)||(9766107-9766145)
[»] chr5 (10 HSPs)
chr5 (10-145)||(35188844-35188979)
chr5 (7-139)||(39800649-39800781)
chr5 (7-139)||(40056734-40056866)
chr5 (7-137)||(39207343-39207473)
chr5 (19-139)||(3925964-3926082)
chr5 (10-139)||(23428985-23429114)
chr5 (7-141)||(2209286-2209422)
chr5 (19-124)||(42836748-42836853)
chr5 (7-139)||(33742965-33743089)
chr5 (83-140)||(26621223-26621280)
[»] scaffold0057 (1 HSPs)
scaffold0057 (7-137)||(66350-66480)
[»] chr1 (15 HSPs)
chr1 (7-139)||(25294169-25294301)
chr1 (10-132)||(31293002-31293124)
chr1 (7-136)||(47140542-47140671)
chr1 (8-140)||(38264567-38264699)
chr1 (7-140)||(29678563-29678696)
chr1 (7-139)||(2192031-2192163)
chr1 (7-139)||(19884651-19884783)
chr1 (10-139)||(48379338-48379467)
chr1 (19-136)||(31585487-31585604)
chr1 (19-139)||(17563040-17563160)
chr1 (8-140)||(36728997-36729125)
chr1 (7-46)||(15378739-15378778)
chr1 (7-141)||(11894053-11894184)
chr1 (83-135)||(15378687-15378739)
chr1 (22-139)||(25987142-25987258)
[»] scaffold0115 (1 HSPs)
scaffold0115 (7-139)||(21815-21947)
[»] chr6 (10 HSPs)
chr6 (19-139)||(8576501-8576621)
chr6 (6-139)||(7622115-7622248)
chr6 (65-139)||(32292684-32292758)
chr6 (18-135)||(28581903-28582020)
chr6 (7-140)||(34435044-34435177)
chr6 (36-124)||(5999308-5999396)
chr6 (7-139)||(35167957-35168089)
chr6 (21-139)||(10409193-10409311)
chr6 (7-135)||(642302-642430)
chr6 (29-134)||(10788326-10788433)
[»] chr2 (8 HSPs)
chr2 (19-139)||(13807323-13807443)
chr2 (7-139)||(5109959-5110090)
chr2 (7-139)||(42625260-42625391)
chr2 (23-135)||(45151483-45151595)
chr2 (8-136)||(5938489-5938617)
chr2 (19-130)||(13626554-13626665)
chr2 (8-130)||(31604592-31604714)
chr2 (7-96)||(5704397-5704486)
[»] scaffold0691 (1 HSPs)
scaffold0691 (7-139)||(7668-7800)
[»] chr7 (13 HSPs)
chr7 (19-139)||(5972731-5972851)
chr7 (7-139)||(33189144-33189276)
chr7 (10-136)||(23809926-23810052)
chr7 (19-136)||(7766814-7766931)
chr7 (18-139)||(22519447-22519568)
chr7 (7-140)||(27336692-27336825)
chr7 (7-139)||(38440692-38440818)
chr7 (7-118)||(30541726-30541837)
chr7 (7-131)||(36298538-36298661)
chr7 (7-135)||(2944314-2944442)
chr7 (18-134)||(1053336-1053453)
chr7 (66-135)||(31457102-31457171)
chr7 (66-139)||(11039491-11039564)
[»] scaffold0155 (1 HSPs)
scaffold0155 (85-140)||(7199-7254)
[»] scaffold0246 (1 HSPs)
scaffold0246 (11-76)||(10768-10833)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 36465061 - 36465265
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    |||||||||||||||||||||||||||||| ||  || ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  36465061 aaaatccatggattacccgctaaatggataaccatgcggatatggatagaacattgatttcatatttgtccaacggagcggatacaaatatcacactatc 36465160  T
Q  110 cgcatccatagatatccatttacatccctaaacacaataacataatgatgcttattgaagttatattggagttttatactgttaatgtttctgcgacgtt 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  36465161 cgcatccgtagatatccatttacatccctaaacacaataacataatgatgcttattgaagttatattggagttttacattgttaatg-ttctgcgacgtt 36465259  T
Q  210 aaatgt 215  Q
    ||||||    
T  36465260 aaatgt 36465265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 51357071 - 51356934
Alignment:
Q  1 cgggtactcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatat 100  Q
    |||||||||||||| | ||||||||||||||||| |||||||| |  |||||||||||  |||  |||||||||||| ||||||||||||||||| ||||    
T  51357071 cgggtactcaaaattcgtggattacccgctaaattgatatccgtgtggatatggatagggcacaaatttcatatttgtccaacggagcggacacagatat 51356972  T
Q  101 cacactatccgcatccatagatatccatttacatccct 138  Q
    |||||||||||||||||| |||||||||||||||||||    
T  51356971 cacactatccgcatccatggatatccatttacatccct 51356934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 8819557 - 8819674
Alignment:
Q  18 tggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatcca 117  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||  |||||||||||| ||||||||| |||| | ||||||||||||||||||||||    
T  8819557 tggattacccgctaaatggatatccgcgcggatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatcca 8819656  T
Q  118 tagatatccatttacatc 135  Q
    | ||||||||||||||||    
T  8819657 tggatatccatttacatc 8819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 41039213 - 41039084
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    |||||||  |||||||||||||||||||||||||| | ||||||||||    || ||||||||||||  | ||||||||||||||  |||||||| ||||    
T  41039213 aaaatccgcggattacccgctaaatggatatccgcacggatatggatatggtacggatttcatatttatctaacggagcggacacggatatcacattatc 41039114  T
Q  110 cgcatccatagatatccatttacatcccta 139  Q
    ||||||||| ||||||||||||||||||||    
T  41039113 cgcatccatggatatccatttacatcccta 41039084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 23626738 - 23626604
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||  ||||||||| |||||| ||||||||||   |||||| ||||   ||  |||||||||||  || |||||||||||||||||||||||||    
T  23626738 ctcaaaatctgtggattacctgctaaacggatatccgcatggatatgaatagtgtacgaatttcatatttatccgacggagcggacacaaatatcacact 23626639  T
Q  107 atccgcatccatagatatccatttacatccctaaa 141  Q
    ||  |||||||| ||||||||||||||||||||||    
T  23626638 atttgcatccatggatatccatttacatccctaaa 23626604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 19841612 - 19841494
Alignment:
Q  20 gattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccata 119  Q
    |||||||||||||| |||||||||| ||||||| |||||   || ||||||||||||  || || ||||||||| | ||||||||||||||||||||||     
T  19841612 gattacccgctaaacggatatccgcacagatatcgatagggtacggatttcatatttatccgacagagcggacatagatatcacactatccgcatccat- 19841514  T
Q  120 gatatccatttacatccctaa 140  Q
    |||| ||||||||||||||||    
T  19841513 gata-ccatttacatccctaa 19841494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 40572139 - 40572261
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||   |   |||||| ||||  | ||||||| |||||| |||||||||||    
T  40572139 ctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggta--aatttcacatttatctaacggagtggacacgaatatcacact 40572236  T
Q  107 atccgcatccatagatatccattta 131  Q
    |||| ||||||| ||||||||||||    
T  40572237 atccacatccatggatatccattta 40572261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 38951491 - 38951375
Alignment:
Q  20 gattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccata 119  Q
    ||||| ||| |||| |||||||||||| ||||||||||||  |   |||| ||||||  | |||||| ||||||| ||||||||||| |||||||||||     
T  38951491 gattatccgttaaacggatatccgcgcggatatggatagagtatgaattttatatttatctaacggaacggacacgaatatcacactctccgcatccatg 38951392  T
Q  120 gatatccatttacatcc 136  Q
    |||||||||||||||||    
T  38951391 gatatccatttacatcc 38951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 22278192 - 22278061
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||| ||||| ||||| |||| ||||||||||  |||||| |||||   || ||||||||||||  |||||||| |||||||  |||||| | |    
T  22278192 ctcaaaatccgtggat-acccgataaacggatatccgcatagatattgatagggtacggatttcatatttatccaacggaacggacacggatatcataat 22278094  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||  ||||||| ||||||||||||||||||||    
T  22278093 atctacatccatggatatccatttacatcccta 22278061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 42555177 - 42555082
Alignment:
Q  42 cgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccatttacatcccta 139  Q
    ||||||||||||||||||  ||  |||||||||||  | ||||||||||| | | ||  |||||||||||||||||| ||||||||| ||||||||||    
T  42555177 cgcgcagatatggatagagtacaaatttcatatttatcaaacggagcggatatacat--cacactatccgcatccatggatatccatctacatcccta 42555082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 40715164 - 40715224
Alignment:
Q  80 caacggagcggacacaaatatcacactatccgcatccatagatatccatttacatccctaa 140  Q
    ||||||| | ||||| |||||||||||||| |||||| | |||||||||||||||||||||    
T  40715164 caacggatcagacacgaatatcacactatctgcatccttggatatccatttacatccctaa 40715224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 47223177 - 47223055
Alignment:
Q  18 tggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatcca 117  Q
    ||||||||| ||  || |||||||||| | |||||||| ||  |||  || ||||||||  ||||||||   || | |||||||| ||||||||||  ||    
T  47223177 tggattacctgcataacggatatccgcacggatatggagagggcacaaatatcatatttatccaacggaatagatataaatatcatactatccgcactca 47223078  T
Q  118 tagatatccatttacatccctaa 140  Q
    | |||||||||||||||||||||    
T  47223077 tggatatccatttacatccctaa 47223055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 13825791 - 13825659
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||||||||   || ||||||||||||  | ||||||||||||||| ||||||||||    
T  13825791 ctcaaaatccgcagattacccgctaaatggatatccgcgcggatatggatagggtacggatttcatatttatctaacggagcggacacatatatcacact 13825692  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  13825691 atccgcatccatggatatccatttacatcccta 13825659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 12148915 - 12148783
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||| ||||| |||||||||||||||||||   |||||||||||   || ||||||||||||  | ||||||| ||||||  ||||||||||    
T  12148915 ctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacact 12148816  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| |||||| |||||||||||||    
T  12148815 atccgcatccatggatatcgatttacatcccta 12148783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 25874952 - 25875084
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  ||||||||||||||| ||||||  |||| |||||||||||   || |||||||| |||  | ||||||||||||||  ||||||||||    
T  25874952 ctcaaaatccgcggattacccgctaaacggatatttgcgcggatatggatagggtacggatttcatctttatctaacggagcggacacggatatcacact 25875051  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||| |||||||  |||||||||||||||||||    
T  25875052 atccacatccatgtatatccatttacatcccta 25875084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 4127825 - 4127751
Alignment:
Q  65 gatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccatttacatcccta 139  Q
    ||||||||||||  |||||||| |||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  4127825 gatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatatccatttacatcccta 4127751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 21287977 - 21287866
Alignment:
Q  28 gctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatcca 127  Q
    |||||| ||||||| || |  ||||||||||   || ||||||||||||  | ||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  21287977 gctaaacggatatctgcacgaatatggatagggtacggatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggatatcca 21287878  T
Q  128 tttacatcccta 139  Q
    ||||||||||||    
T  21287877 tttacatcccta 21287866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 36584279 - 36584156
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||| | ||||||| ||| ||||||||||||||||| |||||| ||||| ||   |||||||||||  |||| ||||| || ||| |||||| |||    
T  36584279 ctcaaaattcgtggattatccgttaaatggatatccgcgcggatatgaatagagcatgaatttcatatttatccaatggagcagatacagatatcatact 36584180  T
Q  107 atccgcatccatagatatccattt 130  Q
    ||| |||||||| |||||||||||    
T  36584179 atctgcatccatggatatccattt 36584156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 48251892 - 48252025
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||| | ||||||||| |||||| |||||||| ||  ||||| |||||   ||  |||||||||||  |||||||| |||| |   ||||||||||    
T  48251892 ctcaaaattcgtggattacctgctaaacggatatccacgtggatatcgatagggtacgaatttcatatttatccaacggaacggatatggatatcacact 48251991  T
Q  107 atccgcatccatagatatccatttacatccctaa 140  Q
    |||| ||| ||| |||||||||||||||||||||    
T  48251992 atccacattcatggatatccatttacatccctaa 48252025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 27926868 - 27927000
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||| ||| |||||||| |||| ||||| ||| |  ||||| ||||||  ||  |||||||||||  | ||||||||||||||  |||| |||||    
T  27926868 ctcaaaatctatgcattacccgttaaacggataaccgtgtcgatatagatagagtacatatttcatatttatctaacggagcggacacggatatgacact 27926967  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||  |||||||  ||||||||||| |||||||    
T  27926968 atctacatccatgaatatccatttatatcccta 27927000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 5295045 - 5294979
Alignment:
Q  65 gatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccattta 131  Q
    ||||||||||||  | ||||||| ||||||  ||||||||||||||||||||||  |||||||||||    
T  5295045 gatttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatatccattta 5294979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 31005899 - 31005767
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||| ||||||| |||||||| ||||||||||||  ||||||||||  ||| ||||||||||||| ||||||||||||||||  ||||||||||    
T  31005899 ctcaaaatccgtggattatccgctaaacggatatccgcgcgaatatggatagggcacggatttcatatttgtccaacggagcggacacggatatcacact 31005800  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    ||| |||||||| ||||| ||||||||||||||    
T  31005799 atctgcatccatggatatacatttacatcccta 31005767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 8227485 - 8227605
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||||||||||||||||||||   ||||||||||||  || ||||||||||||  | ||||||||||||||  |||||||||||||| |||||||    
T  8227485 ggattacccgctaaatggatatccgcatggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccat 8227584  T
Q  119 agatatccatttacatcccta 139  Q
     ||||||||||||||||||||    
T  8227585 ggatatccatttacatcccta 8227605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 7987471 - 7987598
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||   |||||||||||||| |||||||||| | |||||||||||   || ||||||||||||  ||||||||||||||||| |||||||| |    
T  7987471 ctcaaaatccgcagattacccgctaaacggatatccgcacggatatggatagggtacggatttcatatttatccaacggagcggacacagatatcacaat 7987570  T
Q  107 atccgcatccatagatatccatttacat 134  Q
    ||| |||||||| |||||||||||||||    
T  7987571 atctgcatccatggatatccatttacat 7987598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 7968679 - 7968810
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  ||||||||||||||| |||||||||| | |||||||||||   || ||||||||||||  ||||||||||||||||  ||||||||||    
T  7968679 ctcaaaatccgcggattacccgctaaacggatatccgcacggatatggatagggtacggatttcatatttatccaacggagcggacacggatatcacact 7968778  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    ||| ||||||||  || ||| ||||||||||||    
T  7968779 atctgcatccattaat-tccctttacatcccta 7968810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 36583134 - 36583266
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||  ||||||||||| |||| |||||||||||| |||||| ||||   || ||||||||||||  | |||||| |||||||  |||||| |||    
T  36583134 ctcaaaatctgtggattacccgttaaacggatatccgcgcggatatgaatagggtacggatttcatatttatctaacggaacggacacggatatcatact 36583233  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    || ||||||||| ||||||||||||||||||||    
T  36583234 atacgcatccatggatatccatttacatcccta 36583266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 11481295 - 11481187
Alignment:
Q  28 gctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatcca 127  Q
    |||||||| |||||||| | ||||||||||| | ||  |||||||||||  | |  |||||||||||||||||||||||||||||||| || ||||||||    
T  11481295 gctaaatgaatatccgcacggatatggataggatacgaatttcatatttatctattggagcggacacaaatatcacactatccgcatctatggatatcca 11481196  T
Q  128 tttacatcc 136  Q
    |||||||||    
T  11481195 tttacatcc 11481187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 9765250 - 9765346
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||||||   || ||||| ||||||  | |||| |||||||||| ||||||||||    
T  9765250 aaaatccacggattacccgctaaatggatatccacgcggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 9766107 - 9766145
Alignment:
Q  101 cacactatccgcatccatagatatccatttacatcccta 139  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  9766107 cacactatccgcatccatgaatatccatttacatcccta 9766145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 35188844 - 35188979
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    ||||||||||||||| ||||||||||||||| ||| | ||||| ||||| | || ||||||||||||  | |||||||||||||| ||||||||||||||    
T  35188844 aaaatccatggattatccgctaaatggatattcgcacggatatagataggatacagatttcatatttatctaacggagcggacacgaatatcacactatc 35188943  T
Q  110 cgcatccatagatatccatttacatccctaaacaca 145  Q
    ||||||||| |||||||||||||||| |||| ||||    
T  35188944 cgcatccatggatatccatttacatctctaatcaca 35188979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 39800649 - 39800781
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||||||||| ||   |||||||||||   || ||||| ||||||  | ||||||| ||||||  ||||||||||    
T  39800649 ctcaaaatccatggattatccgctaaatggatatctgcatggatatggatagggtacggattttatatttatctaacggagtggacacggatatcacact 39800748  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  39800749 atccgcatccatggatatccatttacatcccta 39800781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 40056866 - 40056734
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||   ||  |||||||||||  | ||||||| ||| ||  ||||||||||    
T  40056866 ctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacgaatttcatatttatctaacggagtggaaacggatatcacact 40056767  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  40056766 atccgcatccatggatatccatttacatcccta 40056734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 39207343 - 39207473
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  ||||||||||||||| |||||||||| | |||||||| ||   || ||||||||||||  | |||||||| |||||  ||||||||||    
T  39207343 ctcaaaatccgcggattacccgctaaacggatatccgcacggatatggaaagggtacggatttcatatttatctaacggagcagacacggatatcacact 39207442  T
Q  107 atccgcatccatagatatccatttacatccc 137  Q
    |||||||||||| ||||||||||||||||||    
T  39207443 atccgcatccatggatatccatttacatccc 39207473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 3926082 - 3925964
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||||||||||||||||| || | ||||||||||    || ||||||||||||  | |||||||||||||||||||||||||||||| |||||||    
T  3926082 ggattacccgctaaatggatatctgcacggatatggatatggtacggatttcatatttatctaacggagcggacacaaatatcacactatccacatccat 3925983  T
Q  119 agatatccatttacatcccta 139  Q
     |||||  |||||||||||||    
T  3925982 ggatat--atttacatcccta 3925964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 23429114 - 23428985
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||   || ||||||||||||  | | |||||| ||||   |||||||||||||    
T  23429114 aaaatccgtggattgcccgctaaatggatatccgcacggatatggatagggtacggatttcatatttatctatcggagcagacaaggatatcacactatc 23429015  T
Q  110 cgcatccatagatatccatttacatcccta 139  Q
    |||||||||  ||||| |||||||||||||    
T  23429014 cgcatccatgaatatctatttacatcccta 23428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 2209422 - 2209286
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||||||||||||||||||| ||||||  |||  | |||||||||  | | ||||| ||||||| ||||| || || ||||  ||||||||||    
T  2209422 ctcaaaatccatggattacccgctaaacggatatttgcgtgggtatggatagggcgcggattttatatttgtccaacagaacgtacacggatatcacact 2209323  T
Q  107 atc--cgcatccatagatatccatttacatccctaaa 141  Q
    |||  | |||| || ||||| ||||||||||||||||    
T  2209322 atctacacatctatggatattcatttacatccctaaa 2209286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 42836853 - 42836748
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    |||||| ||| |||||||||||| || | ||||||||||    ||  |||||||||||  | ||||||||||||||| ||||||||||||||||||||||    
T  42836853 ggattatccgttaaatggatatctgcacggatatggatatggtacatatttcatatttatctaacggagcggacacagatatcacactatccgcatccat 42836754  T
Q  119 agatat 124  Q
     |||||    
T  42836753 ggatat 42836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 33742965 - 33743089
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||| ||||||||||||||| |||||||  | | |||||||||||   || |||| |||||||    |||||||||        |||||||||    
T  33742965 ctcaaaatccacggattacccgctaaaaggatatcgacacggatatggatagggtacggattacatatttatgtaacggagcg--------tatcacact 33743056  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  33743057 atccgcatccatggatatccatttacatcccta 33743089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 26621280 - 26621223
Alignment:
Q  83 cggagcggacacaaatatcacactatccgcatccatagatatccatttacatccctaa 140  Q
    ||||| ||||||  ||||||||||||| |||| || |||||| |||||||||||||||    
T  26621280 cggagtggacacggatatcacactatctgcattcaaagatattcatttacatccctaa 26621223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 66480 - 66350
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||||| ||||||||||||||  |||| ||| |||||||||||||  | | ||||||||||||| |||| ||||| |||||||||||||||||    
T  66480 ctcaaaatccatgaattacccgctaaataaatattcgcacagatatggatagggctcagatttcatatttgtccaatggagctgacacaaatatcacact 66381  T
Q  107 atccgcatccatagatatccatttacatccc 137  Q
    |||||||||||| || |||||||||||||||    
T  66380 atccgcatccatggacatccatttacatccc 66350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 25294169 - 25294301
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||   || ||||||||||||  | ||||||| ||||||  ||||||||||    
T  25294169 ctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacagatttcatatttatctaacggagtggacacggatatcacact 25294268  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  25294269 atccgcatccatggatatccatttacatcccta 25294301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 31293002 - 31293124
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||    | ||||||||||||  | ||||||||||| | |||||||||| ||||    
T  31293002 aaaatccatggattatccgctaaatggatatccgcacagatatggataggctgcggatttcatatttatctaacggagcggatataaatatcacattatc 31293101  T
Q  110 cgcatccatagatatccatttac 132  Q
    ||||||||||||||| |||||||    
T  31293102 cgcatccatagatattcatttac 31293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 47140671 - 47140542
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  ||||||||||||||| | |||||||||| ||||| ||||  | |  ||||||||||||  |||||||||||||||| |||||||||||    
T  47140671 ctcaaaatccgcggattacccgctaaacgaatatccgcgcggatatagataagatatggatttcatatttatccaacggagcggacacgaatatcacact 47140572  T
Q  107 atccgcatccatagatatccatttacatcc 136  Q
    |||||||||||| |||||| ||||||||||    
T  47140571 atccgcatccatggatatctatttacatcc 47140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 38264567 - 38264699
Alignment:
Q  8 tcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacacta 107  Q
    ||||||| | ||||||||| |||||| ||||||| |||| |||||||||||  ||| ||||||||||||| | |||||| |||||||| |||||||| ||    
T  38264567 tcaaaattcgtggattaccggctaaacggatatctgcgcggatatggatagggcacggatttcatatttgtctaacggaacggacacatatatcacagta 38264666  T
Q  108 tccgcatccatagatatccatttacatccctaa 140  Q
    |||| ||||||  ||||||||||||||||||||    
T  38264667 tccgtatccatgaatatccatttacatccctaa 38264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 29678563 - 29678696
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  |||||||||  |||| |||||||||||| |||||||||||   |  ||||||||||||  ||||||||||||||||| |||||| |||    
T  29678563 ctcaaaatccgcggattacccattaaacggatatccgcgcggatatggatagggtatggatttcatatttatccaacggagcggacacatatatcatact 29678662  T
Q  107 atccgcatccatagatatccatttacatccctaa 140  Q
    ||| ||||| || |||||||||||||||||||||    
T  29678663 atctgcatcaatggatatccatttacatccctaa 29678696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 2192031 - 2192163
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||  ||||||| | ||||||||||| | ||||| ||||||||||| |||  ||||||||||||| | || |||||||||||  |||||||| |    
T  2192031 ctcaaaatctgtggattatctgctaaatggatgttcgcgcggatatggataggacatagatttcatatttgtctaatggagcggacacggatatcacatt 2192130  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| || |||||||||||||||||    
T  2192131 atccgcatccatggacatccatttacatcccta 2192163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 19884651 - 19884783
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||| | |||||| |||| |||||| |||| || || ||||| |||||  ||   |||||||||||| ||||||||||||||||| ||||||||||    
T  19884651 ctcaaaattcgtggattccccgttaaatgaatattcgtgcggatatagatagggcatgaatttcatatttgtccaacggagcggacacagatatcacact 19884750  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    ||||||||||||  |||||||||||||||||||    
T  19884751 atccgcatccatgaatatccatttacatcccta 19884783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 48379338 - 48379467
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    |||||||  |||||||| ||||||| ||||||||| | ||||||||||    || ||||||||||||  | ||||||||||||||  || ||||||||||    
T  48379338 aaaatccgcggattacctgctaaattgatatccgcacggatatggatatggtacggatttcatatttatctaacggagcggacacggatttcacactatc 48379437  T
Q  110 cgcatccatagatatccatttacatcccta 139  Q
    ||||||||| ||||||||||||||||||||    
T  48379438 cgcatccatggatatccatttacatcccta 48379467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 31585487 - 31585604
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||||||||| |||||||||||  |||||||||||   || ||||| ||||||  | |||||||||||||   |||| |||||||||||||||||    
T  31585487 ggattacccgctaaacggatatccgcgttgatatggatagggtacggattttatatttatctaacggagcggacaaggatattacactatccgcatccat 31585586  T
Q  119 agatatccatttacatcc 136  Q
     |||||||||||||||||    
T  31585587 ggatatccatttacatcc 31585604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 17563040 - 17563160
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||||||||| |||| ||||||  |||||||||||   |  ||||| ||||||  | ||| ||||||||| | |||| |||||||||||||||||    
T  17563040 ggattacccgctaaacggatgtccgcgttgatatggatagggtatggattttatatttatctaacagagcggacaaagatattacactatccgcatccat 17563139  T
Q  119 agatatccatttacatcccta 139  Q
     ||||||||||||||||||||    
T  17563140 ggatatccatttacatcccta 17563160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 36728997 - 36729125
Alignment:
Q  8 tcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacacta 107  Q
    |||||||||  ||| ||||||||||| |||||||||| | ||||| |||||   ||  |||||||||||  |||||||| |||||||  |||||||||||    
T  36728997 tcaaaatccgcggactacccgctaaacggatatccgcacggatattgatagggtacgaatttcatatttatccaacggatcggacacggatatcacacta 36729096  T
Q  108 tccgcatccatagatatccatttacatccctaa 140  Q
    ||||||||     ||||||||||||||||||||    
T  36729097 tccgcatc----tatatccatttacatccctaa 36729125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 15378778 - 15378739
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgc 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15378778 ctcaaaatccatggattacccgctaaatggatatccgcgc 15378739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 11894184 - 11894053
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||  ||||||||||||||||  ||||||||  | |||||| |||    || ||||||||||||  |||| ||| | ||||||||||| |||||    
T  11894184 ctcaaaatctgtggattacccgctaaacagatatccgtac-gatatgaatatggtacagatttcatatttatccaatggaacagacacaaatattacact 11894086  T
Q  107 atccgcatccatagatatccatttacatccctaaa 141  Q
    |||||||| |||| |||||||||||||||||||||    
T  11894085 atccgcat-cata-atatccatttacatccctaaa 11894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 15378739 - 15378687
Alignment:
Q  83 cggagcggacacaaatatcacactatccgcatccatagatatccatttacatc 135  Q
    |||||| |||||  |||||||||||||||||||||  ||||||||||||||||    
T  15378739 cggagcagacacggatatcacactatccgcatccacggatatccatttacatc 15378687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 25987258 - 25987142
Alignment:
Q  22 ttacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccataga 121  Q
    ||||||| |||| ||||||| | || ||||||||||  | ||  |||||||| ||  | ||||||||||||||  |||||||||||||| ||| ||| |     
T  25987258 ttacccgttaaacggatatctgtgcggatatggataagatacatatttcatacttatctaacggagcggacacgtatatcacactatccacat-catggg 25987160  T
Q  122 tatccatttacatcccta 139  Q
    ||| ||||||||||||||    
T  25987159 tattcatttacatcccta 25987142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 21947 - 21815
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||| ||||||||||||   |||||||||||   || ||||||||||||  | ||||||| ||||||  ||||||||||    
T  21947 ctcaaaatccatggattatccgctatatggatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacact 21848  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||||||||||||||||||    
T  21847 atccgcatccatggatatccatttacatcccta 21815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 8576621 - 8576501
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||| |||||||||||||||||||| ||||||||||||  || ||||||||||||    |||||| |||||||  ||||||||||||||||||||||    
T  8576621 ggattactcgctaaatggatatccgcgcggatatggatagagtacggatttcatatttatttaacggaacggacacggatatcacactatccgcatccat 8576522  T
Q  119 agatatccatttacatcccta 139  Q
     ||||||||||||||||||||    
T  8576521 ggatatccatttacatcccta 8576501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 7622248 - 7622115
Alignment:
Q  6 actcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacac 105  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||||||||    || ||||||||||||   ||||||| |||||||| |||||||||    
T  7622248 actcaaaatccacggattatccgctaaatggatatccacgcggatatggataaggtacagatttcatatttattcaacggaacggacacagatatcacac 7622149  T
Q  106 tatccgcatccatagatatccatttacatcccta 139  Q
    |||| |||||  | ||||||||||||||||||||    
T  7622148 tatctgcatctgtggatatccatttacatcccta 7622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 32292684 - 32292758
Alignment:
Q  65 gatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccatttacatcccta 139  Q
    ||||||||||||  ||||||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||    
T  32292684 gatttcatatttatccaacggagcggacacggatatcatactatccgcatccatcgatatccatttacatcccta 32292758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 28582020 - 28581903
Alignment:
Q  18 tggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatcca 117  Q
    |||||||||||||||| |||||||||||| |||||| ||||   |  ||||||||||||  | |||||||| ||||   |||||||||||||| ||||||    
T  28582020 tggattacccgctaaacggatatccgcgcggatatgaatagggtatggatttcatatttatctaacggagcagacatggatatcacactatccacatcca 28581921  T
Q  118 tagatatccatttacatc 135  Q
    | ||||||||||||||||    
T  28581920 tggatatccatttacatc 28581903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 34435044 - 34435177
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||| | ||||||||||||| ||||| |||| | ||||| |||||   |  ||||||||||||  | || |||||||| ||  ||||||||||    
T  34435044 ctcaaaatccacgaattacccgctaaacggatacccgcacggatatagatagggtagagatttcatatttatctaatggagcggatacggatatcacact 34435143  T
Q  107 atccgcatccatagatatccatttacatccctaa 140  Q
    ||||||||||||  ||||||||||||||||||||    
T  34435144 atccgcatccatgaatatccatttacatccctaa 34435177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 5999396 - 5999308
Alignment:
Q  36 gatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatat 124  Q
    ||||||||||| |||||||||||   || ||||||||||||  | ||||||||||||||  |||||||||||||||||||||| |||||    
T  5999396 gatatccgcgcggatatggatagggtacggatttcatatttatctaacggagcggacacggatatcacactatccgcatccatggatat 5999308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 35167957 - 35168089
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||| ||||||||||| ||| |||||||||| | |||||| ||||   || ||||| ||||||  | || |||| ||| ||  |||||| |||    
T  35167957 ctcaaaatccacggattacccgcgaaacggatatccgcacggatatgaatagggtacggattttatatttatctaatggagtggatacggatatcatact 35168056  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    || ||||||||| ||||||||||||||||||||    
T  35168057 attcgcatccatggatatccatttacatcccta 35168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 10409193 - 10409311
Alignment:
Q  21 attacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatag 120  Q
    ||||||||||||| ||||||||  |  |||||||||||   || ||||| ||||||  ||||||||||| ||||| |||||||||||||  |||||||      
T  10409193 attacccgctaaacggatatccatgtggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccatga 10409292  T
Q  121 atatccatttacatcccta 139  Q
    ||||||||| | |||||||    
T  10409293 atatccattgatatcccta 10409311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 642302 - 642430
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||  |||||||| |||||| |||||||||| | ||||| ||||||  || ||||||||||||    |||||| ||||     |||| |||||    
T  642302 ctcaaaatccgcggattacctgctaaacggatatccgcacggatattgatagagtacggatttcatatttttttaacggaacggatgaggatattacact 642401  T
Q  107 atccgcatccatagatatccatttacatc 135  Q
    |||||||||| | ||||||||||||||||    
T  642402 atccgcatccttggatatccatttacatc 642430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 10788433 - 10788326
Alignment:
Q  29 ctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaa--atatcacactatccgcatccatagatatcc 126  Q
    ||||| |||||||||||| |||||||||||   |  |||||||| |||  | |||||||||||||||   |||||||||||||||||| |||  ||||||    
T  10788433 ctaaacggatatccgcgcggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatgaatatcc 10788334  T
Q  127 atttacat 134  Q
    ||||||||    
T  10788333 atttacat 10788326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 13807443 - 13807323
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    |||||||||||||||||||||||||| | ||||||||||| | || ||||||||||||  | ||||  ||||||||| |||||||||||||||| |||||    
T  13807443 ggattacccgctaaatggatatccgcacggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccat 13807344  T
Q  119 agatatccatttacatcccta 139  Q
     ||||||||||||||||||||    
T  13807343 ggatatccatttacatcccta 13807323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 5110090 - 5109959
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||| |||||||||||||||| ||||||||||    |||||||||||| || ||||||||||||  |  || ||||| ||||||||||||||||    
T  5110090 ctcaaaatccgtggattacccgctaaacggatatccgcatgaatatggatagaatacggatttcatatttatctgacagagcgcacacaaatatcacact 5109991  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||| ||| |||||| |||||||||||||    
T  5109990 atccgcat-catggatatctatttacatcccta 5109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 42625260 - 42625391
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||| ||||||||   |||||||||||   || ||||||||||||  | |||| || ||||||  ||||||||||    
T  42625260 ctcaaaatccatggattatccgctaaatgaatatccgcatggatatggatagggtacggatttcatatttatctaacg-agtggacacggatatcacact 42625358  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
     ||||||||||| ||||||||||||||||||||    
T  42625359 ctccgcatccatggatatccatttacatcccta 42625391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 45151483 - 45151595
Alignment:
Q  23 tacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagat 122  Q
    |||||||||||||||||||| | |||||||| |||| | || ||||||||||||  | ||| ||||||||||  |||||||||||||||||| ||| |||    
T  45151483 tacccgctaaatggatatccacacagatatgaataggatacagatttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggat 45151582  T
Q  123 atccatttacatc 135  Q
    |||||||||||||    
T  45151583 atccatttacatc 45151595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 5938617 - 5938489
Alignment:
Q  8 tcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacacta 107  Q
    ||||||||  |||||||||||||||| |||||||| ||| |||||||||||   ||  |||||||||||  | ||||||| ||||||  |||||||||||    
T  5938617 tcaaaatctgtggattacccgctaaacggatatccacgcggatatggatagggtacgaatttcatatttatctaacggagtggacacggatatcacacta 5938518  T
Q  108 tccgcatccatagatatccatttacatcc 136  Q
    | | ||||||| |||||||||||||||||    
T  5938517 ttcacatccatggatatccatttacatcc 5938489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 13626554 - 13626665
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||| ||||  |||||||||| | |||||||||||   || ||||||||||||  | |||| | ||||||| |||||||||||||||||||| ||    
T  13626554 ggattaccctctaagaggatatccgcccggatatggatagggtacggatttcatatttatctaacgaaacggacacgaatatcacactatccgcatctat 13626653  T
Q  119 agatatccattt 130  Q
     |||||||||||    
T  13626654 ggatatccattt 13626665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 31604714 - 31604592
Alignment:
Q  8 tcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacacta 107  Q
    ||||||||  ||||||||||| ||||  ||||||||| ||||||| ||||    ||  |||||||||||  |||||||||| ||||||||||||||||||    
T  31604714 tcaaaatctgtggattacccgttaaacagatatccgcacagatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacacta 31604615  T
Q  108 tccgcatccatagatatccattt 130  Q
    ||||  |||||  ||||||||||    
T  31604614 tccgtgtccatgaatatccattt 31604592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 5704486 - 5704397
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaa 96  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||| ||||||  || ||||||||||||  | || |||||||||||||    
T  5704486 ctcaaaatcattggattacccgctaaacggatatccgcgcggatatagatagagtacagatttcatatttatctaatggagcggacacaa 5704397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 7800 - 7668
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||| ||||| |||||||||||||||||||   |||||||||||   || ||||||||||||  | ||||||| ||||||  ||||||||||    
T  7800 ctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacact 7701  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| |||||| |||||||||||||    
T  7700 atccgcatccatggatatcgatttacatcccta 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 5972851 - 5972731
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    |||||||||||||||||||||||||| |  ||||||||||   || ||||||||||||  | |||||||| |||||  |||||||||||||||||| |||    
T  5972851 ggattacccgctaaatggatatccgcacgtatatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcat 5972752  T
Q  119 agatatccatttacatcccta 139  Q
     ||||||||||||||||||||    
T  5972751 ggatatccatttacatcccta 5972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 33189276 - 33189144
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||| ||||||||||||||||| ||||||||  || ||||| |||||  |||  |||||||||||  | ||||||| ||||||  |||||| |||    
T  33189276 ctcaaaatctatggattacccgctaaacggatatccatgcggatattgatagggcacatatttcatatttatcaaacggagtggacacggatatcaaact 33189177  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    ||| |||||||||||||||||||||||||||||    
T  33189176 atctgcatccatagatatccatttacatcccta 33189144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 23809926 - 23810052
Alignment:
Q  10 aaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatc 109  Q
    ||||||| |||||||| |||||||||||||||| | | |||||||||||   || ||||||||||||  | ||||||| ||||||  ||||| |||||||    
T  23809926 aaaatccgtggattactcgctaaatggatatccccacggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcgcactatc 23810025  T
Q  110 cgcatccatagatatccatttacatcc 136  Q
    ||||||||| |||||||||||||||||    
T  23810026 cgcatccatggatatccatttacatcc 23810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 7766931 - 7766814
Alignment:
Q  19 ggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatccat 118  Q
    ||||||||||||||| |||||||| | | ||||||||||  | ||  |||||||||||  |||||||||||||||  |||||||||||||||||||||||    
T  7766931 ggattacccgctaaacggatatccacacggatatggataagatacatatttcatatttatccaacggagcggacatgaatatcacactatccgcatccat 7766832  T
Q  119 agatatccatttacatcc 136  Q
      ||||||||||||||||    
T  7766831 gtatatccatttacatcc 7766814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 22519447 - 22519568
Alignment:
Q  18 tggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatcca 117  Q
    ||||||||| ||||||||||||||| ||| |||| ||||||   || ||||||||| ||  ||||| |||| |||| |||||| |||||||||| |||||    
T  22519447 tggattacctgctaaatggatatccacgcggatacggatagggtacggatttcataattatccaaccgagcagacaaaaatattacactatccgtatcca 22519546  T
Q  118 tagatatccatttacatcccta 139  Q
    | ||||||||||||||||||||    
T  22519547 tggatatccatttacatcccta 22519568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 27336825 - 27336692
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||      ||||||||||||  | |||| || ||||||  ||||||||||    
T  27336825 ctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtctggatttcatatttatctaacgaagtggacacggatatcacact 27336726  T
Q  107 atccgcatccatagatatccatttacatccctaa 140  Q
    ||| |||||||| || ||||||||||||||||||    
T  27336725 atctgcatccatggacatccatttacatccctaa 27336692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 38440692 - 38440818
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||| | |||||| ||||||||||||| ||||| ||||||      | ||  |||||||||||  |||||| ||||||||| |||||||||||    
T  38440692 ctcaaaatccacgaattacctgctaaatggatattcgcgcggatatg------atacgaatttcatatttatccaacgaagcggacacgaatatcacact 38440785  T
Q  107 atccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||| ||||| ||||||||||||||    
T  38440786 atccgcatccatggatattcatttacatcccta 38440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 30541726 - 30541837
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    ||||||||||| ||| ||| || | ||||||||||||||| |||||||||||   || |||||||||||   ||||||||||||| || ||||||| |||    
T  30541726 ctcaaaatccacggagtactcgttcaatggatatccgcgcggatatggatagggtacggatttcatattaatccaacggagcggatacgaatatcatact 30541825  T
Q  107 atccgcatccat 118  Q
    ||||||||||||    
T  30541826 atccgcatccat 30541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 36298661 - 36298538
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||| | | |||||||||||||||||||||  |||| |||||| ||||  |||  |||||||||||||||||||||| | ||||  || | |||||    
T  36298661 ctcaaaattcgtagattacccgctaaatggatatttgcgcggatatgaatagg-cacaaatttcatatttgcccaacggagtgaacacggatgtgacact 36298563  T
Q  107 atccgcatccatagatatccattta 131  Q
    || ||||||||| ||||||||||||    
T  36298562 attcgcatccatggatatccattta 36298538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 2944314 - 2944442
Alignment:
Q  7 ctcaaaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacact 106  Q
    |||||||||| |||||||||||||||| ||||||| |  |||||||| ||||   || | ||||||| ||   |||| ||||||||||  |||||||||     
T  2944314 ctcaaaatccgtggattacccgctaaacggatatctggacagatatgaatagggtacagttttcatacttatacaacagagcggacacggatatcacacc 2944413  T
Q  107 atccgcatccatagatatccatttacatc 135  Q
    |||| ||||||| ||| ||||||||||||    
T  2944414 atccacatccatggatgtccatttacatc 2944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 1053336 - 1053453
Alignment:
Q  18 tggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatatttgcccaacggagcggacacaaatatcacactatccgcatcca 117  Q
    ||||||| || ||||||| ||||||| |  |||||| |||   ||| ||||||||||||| | || |||||||||||  ||||||||||||| |||||||    
T  1053336 tggattatccactaaatgtatatccgtgtggatatgaataaggcacagatttcatatttgtctaatggagcggacacggatatcacactatctgcatcca 1053435  T
Q  118 taga-tatccatttacat 134  Q
    | || |||||||||||||    
T  1053436 tggattatccatttacat 1053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 31457171 - 31457102
Alignment:
Q  66 atttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccatttacatc 135  Q
    |||||||||||  |||||  | ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  31457171 atttcatatttatccaacaaaacggacacaaatatcacactatccacatcggtagatatccatttacatc 31457102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 11039491 - 11039564
Alignment:
Q  66 atttcatatttgcccaacggagcggacacaaatatcacactatccgcatccatagatatccatttacatcccta 139  Q
    |||||||||||  ||||||||| ||||||  |||||| | |||| |||||||| |||||| |||||||||||||    
T  11039491 atttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatatctatttacatcccta 11039564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 7199 - 7254
Alignment:
Q  85 gagcggacacaaatatcacactatccgcatccatagatatccatttacatccctaa 140  Q
    ||||||| ||| ||||||||||||| |||||||| ||||||||||||||| |||||    
T  7199 gagcggatacagatatcacactatctgcatccatggatatccatttacatacctaa 7254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 10768 - 10833
Alignment:
Q  11 aaatccatggattacccgctaaatggatatccgcgcagatatggatagaacactgatttcatattt 76  Q
    |||| |||||||||||||||||| |||||||||||  |||||| ||||   || ||||||||||||    
T  10768 aaatacatggattacccgctaaacggatatccgcgtggatatgaatagggtacggatttcatattt 10833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University