View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18906_low_2 (Length: 565)
Name: NF18906_low_2
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18906_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 9381664 - 9381119
Alignment:
| Q |
1 |
aatttcaacagaatgggcattagttgagttaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaatagacta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9381664 |
aatttcaacagaatgggcattagttgagctaatgaacaacccttcattattacaaaaagctcgtgaagaaatagacaatatagtagggaaaaatagacta |
9381565 |
T |
|
| Q |
101 |
gtagatgaatccgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacccgtccctatggtcactagaagatgtg |
200 |
Q |
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| T |
9381564 |
gtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacccgtccctatggtcactagaagatgtg |
9381465 |
T |
|
| Q |
201 |
tcacgcaatgtaaaattgaaaattatgtgatcccagaaaatagtttaatatttgtcaataattgggctatgggaagaaacccagcttattgggagaaacc |
300 |
Q |
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| T |
9381464 |
tcacgcaatgtaaaattgaaaattatgtgatcccagaaaatagtttaatatttgtcaataattgggctatgggaagaaacccagcttattgggagaaacc |
9381365 |
T |
|
| Q |
301 |
attggaatttaatccagaaaggtttctaaaaaattcagcaaattccaatggggttattgatgtgaggggacaaaattttcagattttgccatttgggtcg |
400 |
Q |
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| T |
9381364 |
attggaatttaatccagaaaggtttctaaaaaattcagcaaattccaatggggttattgacgtgaggggacaaaattttcagattttgccatttgggtca |
9381265 |
T |
|
| Q |
401 |
ggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctataattcaatgctttgattttaattttgtgggtccta |
500 |
Q |
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| T |
9381264 |
ggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctataattcaatgctttgattttaattttgtgggtccca |
9381165 |
T |
|
| Q |
501 |
agggtgagattttgaagggtggtgatattgttattgatgtgaatga |
546 |
Q |
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| T |
9381164 |
agggtgagattttgaagggtcgtgatattgttattgatgtgaatga |
9381119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 9399089 - 9398544
Alignment:
| Q |
1 |
aatttcaacagaatgggcattagttgagttaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaatagacta |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9399089 |
aatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagacta |
9398990 |
T |
|
| Q |
101 |
gtagatgaatccgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacccgtccctatggtcactagaagatgtg |
200 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
9398989 |
gtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttcctatggtcactagaagatgtg |
9398890 |
T |
|
| Q |
201 |
tcacgcaatgtaaaattgaaaattatgtgatcccagaaaatagtttaatatttgtcaataattgggctatgggaagaaacccagcttattgggagaaacc |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
9398889 |
tcacgcaatgcaaaattgaaaattatgtgatcccagaaaatagtttaatctttgtgaataattgggctatgggaagaaactcagcttattgggacaaacc |
9398790 |
T |
|
| Q |
301 |
attggaatttaatccagaaaggtttctaaaaaattcagcaaattccaatggggttattgatgtgaggggacaaaattttcagattttgccatttgggtcg |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9398789 |
attggaatttaatccagaaagatttctaaaaaattcaacaaattccaatggggttattgatgtgagggggcaaaattttcagattttgccatttgggtca |
9398690 |
T |
|
| Q |
401 |
ggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgcttggtgctataattcaatgctttgattttaattttgtgggtccta |
500 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9398689 |
ggaagaaggatgtgtcctggggttactttagcaatgcaagaagttccagctttgcttggtgccataattcaatgctttgattttaattttgtgggtccta |
9398590 |
T |
|
| Q |
501 |
agggtgagattttgaagggtggtgatattgttattgatgtgaatga |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398589 |
agggtgagattttgaagggtggtgatattgttattgatgtgaatga |
9398544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 23244358 - 23244545
Alignment:
| Q |
53 |
caaaaagctcgtgaagaaatagacaatgtagtagggaaaaatagactagtagatgaatccgacggtccaaatcttccttatattcaagccataataaaag |
152 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| ||||| ||| ||| || ||||||||| | ||||| | || ||| | ||||| || |||| || |
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| T |
23244358 |
caaaaagctcgtgaagaaatcgacaacatagtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagag |
23244457 |
T |
|
| Q |
153 |
aaacatttcgtctacacccacccgtccctatggtcactagaagatgtgtcacgcaatgtaaaattgaaaattatgtgatcccagaaaa |
240 |
Q |
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||||||||||||| |||||||| || |||||||| || ||||||||||| | |||| ||| ||||||| ||||||||||||||||| |
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| T |
23244458 |
aaacatttcgtcttcacccaccagttcctatggttacaagaagatgtgtagcagaatgcaaagttgaaaactatgtgatcccagaaaa |
23244545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 486
Target Start/End: Original strand, 23244654 - 23244784
Alignment:
| Q |
356 |
attgatgtgaggggacaaaattttcagattttgccatttgggtcgggaagaaggatgtgtcctggagttactttagcaatgcaagaagttccagctttgc |
455 |
Q |
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|||||||| ||||||||| ||||||| || | |||||||| || |||||||| ||||||||||| ||| | ||||| ||||||||||| ||||| |||| |
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| T |
23244654 |
attgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctggtgtttcgttagccatgcaagaagtgccagcattgc |
23244753 |
T |
|
| Q |
456 |
ttggtgctataattcaatgctttgattttaa |
486 |
Q |
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||||||| || ||||| || ||||||||||| |
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| T |
23244754 |
ttggtgcaattattcagtgttttgattttaa |
23244784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 34762558 - 34762524
Alignment:
| Q |
389 |
ccatttgggtcgggaagaaggatgtgtcctggagt |
423 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
34762558 |
ccatttgggtctggaagaaggatgtgtcctggagt |
34762524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 34781630 - 34781664
Alignment:
| Q |
389 |
ccatttgggtcgggaagaaggatgtgtcctggagt |
423 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
34781630 |
ccatttgggtctggaagaaggatgtgtcctggagt |
34781664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 23223372 - 23223331
Alignment:
| Q |
118 |
tccaaatcttccttatattcaagccataataaaagaaacatt |
159 |
Q |
| |
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|||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
23223372 |
tccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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