View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18906_low_4 (Length: 303)
Name: NF18906_low_4
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18906_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 44109651 - 44109410
Alignment:
| Q |
48 |
aacagaagtagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgcattatattatacacaatatttaaaaagataaatgacgatgat |
147 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44109651 |
aacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacacattatattatacacaatatttaaaaagataaatgatgatgat |
44109552 |
T |
|
| Q |
148 |
cagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaaca |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44109551 |
cagataaaagataatacataccttcaaagcgtttgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaaca |
44109452 |
T |
|
| Q |
248 |
tgccataacatgttgatacagatccacattgatgttttgcat |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44109451 |
tgccataacaggttgatacagatccacattgatgttttgcat |
44109410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 40450765 - 40450897
Alignment:
| Q |
112 |
ttatacacaatatttaaaaagat-aaatgacgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||||| | |||| || | |||||||| ||||||||||||||||| |
|
|
| T |
40450765 |
ttatacacaatatttaaaaagattaaatgaagatgatgagagaaaaggtaatacataccctaaaagtgtcctttgatagtgtaagagacttgacacttgc |
40450864 |
T |
|
| Q |
211 |
aagtccactcaatagcacaactgaataaggaga |
243 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |
|
|
| T |
40450865 |
aagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 40276555 - 40276437
Alignment:
| Q |
56 |
tagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgcat-----tatattatacacaatatttaaaaagataaatgacgatgatcag |
150 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
40276555 |
tagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaatacgcatcttattatattatacacaatatttaaaaagataaatgaagatgttcag |
40276456 |
T |
|
| Q |
151 |
ataaaagataatacatacc |
169 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
40276455 |
aaaaaagacaatacatacc |
40276437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University