View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18906_low_8 (Length: 277)
Name: NF18906_low_8
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18906_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 31347086 - 31346837
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagctgaagtaatagctgccgatttga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31347086 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttatcctttagctgaagtaatagctgctgatttga |
31346987 |
T |
|
| Q |
118 |
accaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctc |
217 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346986 |
accaaacctcaatggtcggaaattcgtcaaactttttcttctctcaagaccaatcgctgttgaggatgcagttggagaatgagaatattggaacaacctc |
31346887 |
T |
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| Q |
218 |
aaaccaaagcataaaccaagagttttcttttgggagatattctgatgatg |
267 |
Q |
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| T |
31346886 |
aaaccaaagcataaaccaagagttttcttttgggagatattctgatgatg |
31346837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 31357746 - 31357544
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagctgaagtaatagctgccgatttga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31357746 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaattggatgtttatcctttagctgaagtaatagctgctgatttga |
31357647 |
T |
|
| Q |
118 |
accaaactacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctc |
217 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357646 |
accaaacctcaatggtcgggaattcgtcaaactttttcttctctcaagaacaattgctgttgaggatgcagttggagaatgagaatattggaacaacctc |
31357547 |
T |
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| Q |
218 |
aaa |
220 |
Q |
| |
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||| |
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| T |
31357546 |
aaa |
31357544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 2920289 - 2920430
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---cctttagctgaagtaatagctgccgatt |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || || ||| |||| |
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| T |
2920289 |
aacattgttcataacaatgaaacttgtatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttcgctgaaggaacagttgctgatt |
2920388 |
T |
|
| Q |
115 |
tgaaccaaactacaatggtcggaaattcatcaaactttttct |
156 |
Q |
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|||||||| |||||||||| ||||||||||||||||||| |
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| T |
2920389 |
ccaaccaaacctcaatggtcgggaattcatcaaactttttct |
2920430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 2925674 - 2925822
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagctgaagtaatagctgccgatttga |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||| || || || || ||| | |
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| T |
2925674 |
aacattgttcataacaatgaaacaagtatcttgaacatttcatcgtcttcaaaacaaatggatgtttaccctttagctggagcaacagtggctgatccca |
2925773 |
T |
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| Q |
118 |
accaaactacaatggtcggaaattcatcaaactttttcttctctcaaga |
166 |
Q |
| |
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||| ||| |||||| ||| ||||| ||||||||||||||||| ||||| |
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| T |
2925774 |
acctaacctcaatggccgggaattcttcaaactttttcttctcccaaga |
2925822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 29272326 - 29272460
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---cctttagctgaagtaatagctgccgatt |
114 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || | ||| |||| |
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| T |
29272326 |
aacattgttcacaacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttagctgaagcaacaattgctgatt |
29272425 |
T |
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| Q |
115 |
tgaaccaaactacaatggtcggaaattcatcaaac |
149 |
Q |
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|||||||| |||||||||| |||||||||||| |
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| T |
29272426 |
ccaaccaaacctcaatggtcgggaattcatcaaac |
29272460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 9447693 - 9447837
Alignment:
| Q |
18 |
aacattgttcataacaatgaaactagtat----cttgaacatttcatcctcttcaaagcaaatggatgtttat---cctttagctgaagtaatagctgcc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || | ||| |
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| T |
9447693 |
aacattgttcataacaatgaaactagtatatatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttagctgaagcaacaattgct |
9447792 |
T |
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| Q |
111 |
gatttgaaccaaactacaatggtcggaaattcatcaaactttttc |
155 |
Q |
| |
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||| |||||||| |||| ||||| |||||||||||||||||| |
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| T |
9447793 |
tattccaaccaaacctcaattgtcgggaattcatcaaactttttc |
9447837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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