View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18906_low_9 (Length: 235)
Name: NF18906_low_9
Description: NF18906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18906_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38980561 - 38980781
Alignment:
| Q |
1 |
acttggttgaaaaattatttgaaggtctctttactaaagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaacca |
100 |
Q |
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| T |
38980561 |
acttggttgaaaaattatttgaaggtctctttactaaagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaacca |
38980660 |
T |
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| Q |
101 |
actagaacaagtcagtgtctttgttgaccttgtcaacaacattgtgagaatgtcagagaaatgcaaaattttgacaaaggagctagactcagccaagaag |
200 |
Q |
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| T |
38980661 |
actagaacaagtcagtgtctttgttgaccttgtcaacaacattgtgagaatgtcagagaaatgcaaaattttgacaaaggagctagactcagccaagaag |
38980760 |
T |
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| Q |
201 |
agcacccgtcaagataataaa |
221 |
Q |
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| T |
38980761 |
agcacccgtcaagataataaa |
38980781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 39737759 - 39737862
Alignment:
| Q |
45 |
ttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaaccaactagaacaagtcagtgtctttgttgaccttgtcaacaacattg |
144 |
Q |
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| T |
39737759 |
ttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaaccttctcaacaacattg |
39737858 |
T |
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| Q |
145 |
tgag |
148 |
Q |
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|||| |
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| T |
39737859 |
tgag |
39737862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 39856330 - 39856229
Alignment:
| Q |
52 |
cagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaaccaactagaacaagtcagtgtctttgttgaccttgtcaacaacattgtgagaat |
151 |
Q |
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| T |
39856330 |
cagtcatggaaaaaattgaagctaatgttgacatgttctcttctcaccaactagaacaagtcggtgttgttgttaaccttgtcaagaacattgcgaggat |
39856231 |
T |
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| Q |
152 |
gt |
153 |
Q |
| |
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|| |
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| T |
39856230 |
gt |
39856229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39863580 - 39863498
Alignment:
| Q |
1 |
acttggttgaaaaattatttgaaggtctctttactaaagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctgac |
83 |
Q |
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||||||||||||||||| |||||| ||| | |||||| ||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
39863580 |
acttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaatacagtcaaggaaaaaattgatgctaatgctgac |
39863498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 53495382 - 53495493
Alignment:
| Q |
42 |
aacttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaaccaactagaacaagtcagtgtctttgttgaccttgtcaacaaca |
141 |
Q |
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|||||||||||| |||||| |||| |||||||||||||||| ||| |||||| | ||| |||||||| | |||| ||||| ||||| ||||||||| |
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| T |
53495382 |
aacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattggtgttgttgttaaccttctcaacaaca |
53495481 |
T |
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| Q |
142 |
ttgtgagaatgt |
153 |
Q |
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||||||| |||| |
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| T |
53495482 |
ttgtgaggatgt |
53495493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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