View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18907_high_1 (Length: 898)

Name: NF18907_high_1
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18907_high_1
NF18907_high_1
[»] chr8 (1 HSPs)
chr8 (13-880)||(9545672-9546539)


Alignment Details
Target: chr8 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 13 - 880
Target Start/End: Original strand, 9545672 - 9546539
Alignment:
Q  13 catcaacaacatcccaagatatgaaatttttgtagtttataatccaaacaacaagacaaactattccaatagaagttgtaagcctgccaccaaattcgtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545672 catcaacaacatcccaagatatgaaatttttgtagtttataatccaaacaacaagacaaactattccaatagaagttgtaagcctgccaccaaattcgtc 9545771  T
Q  113 taacttcttcttcaagggagtatcgctttcctccaacgaagcctcgtgtatttgcttctgtatctttccgatttcggtgttcattgccgtggtaataaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545772 taacttcttcttcaagggagtatcgctttcctccaacgaagcctcgtgtatttgcttctgtatctttccgatttcggtgttcattgccgtggtaataaca 9545871  T
Q  213 atgcaaatacagcttccattgacaacagttgtgcctgcaaataccatattttctttggcctgcaattcacaatcatccatgaaaataggattggttcctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545872 atgcaaatacagcttccattgacaacagttgtgcctgcaaataccatattttctttggcctgcaattcacaatcatccatgaaaataggattggttcctt 9545971  T
Q  313 tgagaactggcattgcttctccggttaacgagctttgttccaatctcagtgttgatgttttcaaagctgcaactctcatgtcagccgggactttatctcc 412  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9545972 tgagaaccggcattgcttctccggttaacgagctttgttccaatctcagtgttgatgttttcaaagctgcaactctcatgtcggccgggactttatctcc 9546071  T
Q  413 aactcgcaactcaacaatgtcgcctggaacaagctcccgtgcaggcaaatcaggaacaaaatatccatcccttaacacttttatagattcacattgcaac 512  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546072 aacgcgcaactcaacaatgtcgcctggaacaagctcccgtgcaggcaaatcaggaacaaaatatccatcccttaacacttttatagattcacattgcaac 9546171  T
Q  513 tctttaagagcctcaagagccttctcagcattgttctcttgccaaactccgacaattgcgttaagtactaagattaaaatgatcacgagcggctctacat 612  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546172 tctttaagagcctcaagagccttttcagcattgttctcttgccaaactccgacaattgcgttaagtactaagattaaaatgatcacgagcggctctacat 9546271  T
Q  613 aagcctcgaatccagattcacttccttcaaagtatgccaaaagaaatgatataaaggctgctgccaaaagtatcttcaccaacatgtcatcaaactgttc 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9546272 aagcctcgaatccagattcacttccttcaaagtatgccaaaagaaatgatataaaggctgctgccaaaagtatcttcaccaacatgtcatcaaattgttc 9546371  T
Q  713 taacactagtttccataacggctttcccttctcttttgctagctcattccaaccgtatttctcacgccgcttctgaacctcattagaactcaaacccttt 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546372 taacactagtttccataacggctttcccttctcttttgctagctcattccaaccgtatttctcacgccgcttctgaacctcattagaactcaaacccttt 9546471  T
Q  813 tccagtttcacaccatactcttccaagcactcatcaactgaccatgaccatgcagggaatggcttttc 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546472 tccagtttcacaccatactcttccaagcactcatcaactgaccatgaccatgcagggaatggcttttc 9546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University