View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_high_11 (Length: 241)
Name: NF18907_high_11
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_high_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 49607877 - 49607643
Alignment:
| Q |
7 |
atactaagggtatcattcgatttcgacgtttgaattgtcttgcagcgcacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatg |
106 |
Q |
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| T |
49607877 |
ataccaagggtatcattcgatttcgacgtttgatttgtcttgtagcgcacttcgcaaatacgtgtttgctgtcggggctgtcttgaccttgttttcaatg |
49607778 |
T |
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| Q |
107 |
ttgacttcgactttgtactattgggcacactgcaagaccgacacaactgatttttggatgagataccaaaatgaagatattgaaatggacaaacgtaatc |
206 |
Q |
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| T |
49607777 |
ttgacttcgactttgtactattaggcacactgcaagaccgacacaactggtttttgaatgagataccaaaatgaagatattgaaatggacaaacgtaatc |
49607678 |
T |
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| Q |
207 |
acattcgtgaatctgaaagaccgtgaagatttact |
241 |
Q |
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| T |
49607677 |
acattcgtgaatctgaaaggccgtgaagatttact |
49607643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 49613038 - 49612859
Alignment:
| Q |
28 |
ttcgacgtttgaattgtcttgcagcgcacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactat |
127 |
Q |
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| T |
49613038 |
ttcgacgcttggtttgtcttgcagcgcacttcgcaaaggcgtgtttgcggtcggggctgtcttgaccttgttttcaatgttgacttcaattttgtactat |
49612939 |
T |
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| Q |
128 |
tgggcacactgcaagaccgacacaactgatttttggatgagataccaaaatgaagatattgaaatggacaaacgtaatca |
207 |
Q |
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| T |
49612938 |
tgggcatattgcaaagctgacatcgctgatttttggatgagacaccaaaatgaagatattgaaatggacacacgtaatca |
49612859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 49603174 - 49603092
Alignment:
| Q |
54 |
cacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactattgggcacac |
136 |
Q |
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| T |
49603174 |
cacttcgcaaaggtgtgtttgctgctggggctgccttgaccttgttctctatgttggcttctattttgtactattgggcacac |
49603092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 49623438 - 49623375
Alignment:
| Q |
68 |
gtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactattggg |
131 |
Q |
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| T |
49623438 |
gtgtttgctgctggagctgccttgatcttgttttcaatgttgacttctattttgtactattggg |
49623375 |
T |
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