View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_high_3 (Length: 590)
Name: NF18907_high_3
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 47088110 - 47088428
Alignment:
| Q |
11 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
110 |
Q |
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| T |
47088110 |
cagagattaacctcacacttaaaggaagcattagttatgtgctaaaatcacattcactacacaactgctgagctatgttgtgtgtgtaggtgggtagaca |
47088209 |
T |
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| Q |
111 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtatcagaggctcggattc-nnnnnnnnnntgtagcaca |
209 |
Q |
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| T |
47088210 |
cgtctgtgttagagagagagaatcctaaccagacaaactccaaagctccaatgacagaaaagtaacagaggctcggattcaaaaaaaaaaatgtagcaca |
47088309 |
T |
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| Q |
210 |
tttgttttcaaaacaataaaacaaacatgttatacgttattttctagtattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatta |
309 |
Q |
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| T |
47088310 |
tttgttttcaaaacaataaaacaaacatgttataagttattttctagcattccacattacgggcagctaactgtctaagacaaagaatgagtgtaaatta |
47088409 |
T |
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| Q |
310 |
ttgcattagctggccagat |
328 |
Q |
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| T |
47088410 |
ttgcattagctggccagat |
47088428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 323 - 573
Target Start/End: Original strand, 47088458 - 47088704
Alignment:
| Q |
323 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacgctataaaattacattaccaagatacaatagtatgtaatgacatgaaatataga |
422 |
Q |
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| T |
47088458 |
ccagatgttttgtttaacatcacaagcagaagctacttaagttcacactataaaattacattaccaagatacaatagtatgtaatgacatgaaatataga |
47088557 |
T |
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| Q |
423 |
tcatgtattgcatttcaaatttcttcacatatttctccaatagctgaacctcttaataaagacacgagagacatgtatgttatgttgtatagtcaaataa |
522 |
Q |
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| T |
47088558 |
tcatgtattgcatttcaaatttcttcaca----tctccaatagctgaacctcttaataaagacacgagagacatgtatgttatgttgtatagtcaaataa |
47088653 |
T |
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| Q |
523 |
acaattaaacacaacacataccagactatattaacattggtagttttccct |
573 |
Q |
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| T |
47088654 |
acaattaaacacaacacataccagactatattaacattggtagttttccct |
47088704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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