View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_high_5 (Length: 488)
Name: NF18907_high_5
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 229 - 472
Target Start/End: Complemental strand, 28599025 - 28598782
Alignment:
| Q |
229 |
gaggacaacatcattattactctttctttggcagcattaaatgctttttctacatcatcaatggatgagaatagcatttcagggtggttggttatgttag |
328 |
Q |
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| T |
28599025 |
gaggacaacatcatcattactctttctttggcagcattaaatgctttttctacttcatcaatggatgagaatagcatttcagggtggttggttatgttag |
28598926 |
T |
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| Q |
329 |
gtagttctagttcaagattttttgctaattcaaaagcacgcatgatgaaattcatgacctcttccatggcttcgggtagtttaggatttgtttggtttac |
428 |
Q |
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| T |
28598925 |
gtagttctagttcaagattttttgctaattcaaaagcacgcatgatgaaattcatgacctcttccatggcttcgggaagtttaggatttgtttggtttac |
28598826 |
T |
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| Q |
429 |
tataaatttgaacacaatctttgaaaatatataaaggggttgtt |
472 |
Q |
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| T |
28598825 |
tataaatttgaacacaatctttgaaaatatataaaggggttgtt |
28598782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 28599228 - 28599052
Alignment:
| Q |
23 |
ttatcatcttattctcaagtagaacactcacatcaaaagggtgttgcattagaagcaattgatccattgaatgtgcatgcattgaaattgcacttccact |
122 |
Q |
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| T |
28599228 |
ttatcatcttattctcaagtagaacactcacatcaaaagggtgttgaattagaagcaattgatccattgaatgtgcatgcattgaaattgcacttccact |
28599129 |
T |
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| Q |
123 |
tccaccaatttgaacatgttgagttttttgcatgaaaacatcatgagacggaatttgagcaaaggaattagaaggtt |
199 |
Q |
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| T |
28599128 |
tccaccaatttgagcatgttgagttttttgcatgaaaacatcatgagacggaatttgagcaaaggaattagaaggtt |
28599052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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