View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_high_7 (Length: 394)
Name: NF18907_high_7
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 102 - 379
Target Start/End: Complemental strand, 7333804 - 7333527
Alignment:
| Q |
102 |
catttttcatcaccaaaatctcacaaacaacaaagtcaaaaaacacaagttttttcacctacccttttgcttaatttgttcaattctcccactactacaa |
201 |
Q |
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| T |
7333804 |
catttttcatcaccaaaatctcacaaacaacaaagccaaaaaacacaagttttttcaccgacccttttgcttaatttgttcaattctcccactactacaa |
7333705 |
T |
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| Q |
202 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataat |
301 |
Q |
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| T |
7333704 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataat |
7333605 |
T |
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| Q |
302 |
gaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgtt |
379 |
Q |
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| T |
7333604 |
gaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgccatgcaatgaagagtttgtt |
7333527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 102 - 379
Target Start/End: Original strand, 7299872 - 7300148
Alignment:
| Q |
102 |
catttttcatcaccaaaatctcacaaacaacaaagtcaaaaaacacaagttttttcacctacccttttgcttaatttgttcaattctcccactactacaa |
201 |
Q |
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| T |
7299872 |
catttttcatcaccaaaatctcacaaacaacaaagccaaaaaacacaagtttt-tcacctacccttttgcttaatttgttcaattcttccactactacaa |
7299970 |
T |
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| Q |
202 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataat |
301 |
Q |
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| T |
7299971 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaataat |
7300070 |
T |
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| Q |
302 |
gaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgtt |
379 |
Q |
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| T |
7300071 |
gagcatagcaacacaaagtgctgttgtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgtt |
7300148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 200 - 379
Target Start/End: Complemental strand, 7340495 - 7340316
Alignment:
| Q |
200 |
aatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaata |
299 |
Q |
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| T |
7340495 |
aatgttcaatcaagaaaaactcatgcattaccaagtggaagcatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaatc |
7340396 |
T |
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| Q |
300 |
atgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgtt |
379 |
Q |
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| T |
7340395 |
atgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgtt |
7340316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7333905 - 7333844
Alignment:
| Q |
1 |
aaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
62 |
Q |
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| T |
7333905 |
aaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
7333844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7299771 - 7299832
Alignment:
| Q |
1 |
aaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
62 |
Q |
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| T |
7299771 |
aaccaagtaccctatggtccccaacattcttccacacactctttgaaagtttctctctcaca |
7299832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 7376402 - 7376330
Alignment:
| Q |
202 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcat---ggagctactacatgagagtaagaaca |
272 |
Q |
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| T |
7376402 |
tgttcaatcaagagaaacacatgcattgccaagt-gaaccatcatcatggagctactacatgagagtaagaaca |
7376330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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