View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_11 (Length: 381)
Name: NF18907_low_11
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 177 - 359
Target Start/End: Complemental strand, 6036293 - 6036111
Alignment:
| Q |
177 |
caagtcaataaagtccataataccaacctcagttttctcacttcttaaacctcattatgggttctcagttgatagtgaagacaactacatataaaacaca |
276 |
Q |
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| T |
6036293 |
caagtcaataaagtccataataccaacctcagttttctcacttcttaaacctcattatgggttctcagttgatagtgaagacaactacatataaaacaca |
6036194 |
T |
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| Q |
277 |
acattttcagccaaacagttaaacaactaagttcttgacaaattcagtctagttaaggttttgatttataaagaccaacaatt |
359 |
Q |
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| T |
6036193 |
acattttcagctaaacagttaaacaactaagctcttgacaaattcagtctagttaaggttttgagttataaataccaacaatt |
6036111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 6036452 - 6036397
Alignment:
| Q |
13 |
aatatcaaagaacttgtaagtttcattttgtttaacaatctactttaataaacata |
68 |
Q |
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| T |
6036452 |
aatatcaaagaacttgcaagtttcattttgtttaacaatctactttaataaacata |
6036397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 39280112 - 39280046
Alignment:
| Q |
253 |
gaagacaactacatataaaacacaacattttc----agccaaacagttaaacaactaagttcttgac |
315 |
Q |
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| T |
39280112 |
gaagacaactacagataaaacacaacagtttcagtaagccaaacactagaacaactaagttcttgac |
39280046 |
T |
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