View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_12 (Length: 346)
Name: NF18907_low_12
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 3903913 - 3903589
Alignment:
| Q |
5 |
gactgagaagaagaagtatacaaagtactcttatttcttttgtaatatgtgtgtatgtaagaaataaaagaactctattccaacaatgtcataatcaatg |
104 |
Q |
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| T |
3903913 |
gactgataaaaagaagtatacaaagtactcttatttcttttgtaatatgtgtgtatgtaagaaataaaagaactctattccaacaatgtcataatcaatg |
3903814 |
T |
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| Q |
105 |
cttaatctggtatcagttgagatgttttattttaggcttaacaatgagtaggtaggtttgtgcnnnnnnngttgttgctaatttcacgatcatgaagatg |
204 |
Q |
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| T |
3903813 |
cttaatctggtatcagttgagatgttttattttaggcttaacaatgagtaggtaggtttgtgctttttttgttgttgctaatttcacgatcatgaagatg |
3903714 |
T |
|
| Q |
205 |
attatctacttgatgtgttccacctaatttcaaaactaatgcgtcaacatatagaaaatgatgttatatttcttgtaaatttgcatattaatataggttc |
304 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903713 |
attatctacttgatgtgttctacctaatttcaaaactaatgcgtcaacatatagaaaatgatgttatatttcttgtaaatttgcatattaatataggttc |
3903614 |
T |
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| Q |
305 |
aattgtatatataaagcttataggt |
329 |
Q |
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||||||||||||||||||||||||| |
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| T |
3903613 |
aattgtatatataaagcttataggt |
3903589 |
T |
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