View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_13 (Length: 340)
Name: NF18907_low_13
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 9545581 - 9545258
Alignment:
| Q |
12 |
gtcttccggcggttatcacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttggg |
111 |
Q |
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| T |
9545581 |
gtcttccggcggttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttggg |
9545482 |
T |
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| Q |
112 |
atgtaccactgtgatttgttcagataaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgt |
211 |
Q |
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| T |
9545481 |
atgtaccactgtgatttgttcagataaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgt |
9545382 |
T |
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| Q |
212 |
agagtcattagtgttgaagggacaacatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcgg |
311 |
Q |
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| T |
9545381 |
agagtcattagtgttgaagggacaacatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcgg |
9545282 |
T |
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| Q |
312 |
aaatttgtgctgtttgtgatgatg |
335 |
Q |
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| T |
9545281 |
aaatttgtgctgtttgtaatgatg |
9545258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 40393805 - 40393678
Alignment:
| Q |
32 |
acttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactgtgatttgtt |
131 |
Q |
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| T |
40393805 |
acttgtctcgcacttggtactcgcaaaatggcccagaagaatgccctggttaggaagctaccaagtgttgaaaccctgggttgcacaactgtgatatgtt |
40393706 |
T |
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| Q |
132 |
cagataaaaccggtacactgactacaaa |
159 |
Q |
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| T |
40393705 |
ctgataaaactggtacactgactacaaa |
40393678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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