View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18907_low_16 (Length: 241)
Name: NF18907_low_16
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_16 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 49607877 - 49607643
Alignment:
| Q |
7 |
atactaagggtatcattcgatttcgacgtttgaattgtcttgcagcgcacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatg |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
49607877 |
ataccaagggtatcattcgatttcgacgtttgatttgtcttgtagcgcacttcgcaaatacgtgtttgctgtcggggctgtcttgaccttgttttcaatg |
49607778 |
T |
|
| Q |
107 |
ttgacttcgactttgtactattgggcacactgcaagaccgacacaactgatttttggatgagataccaaaatgaagatattgaaatggacaaacgtaatc |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49607777 |
ttgacttcgactttgtactattaggcacactgcaagaccgacacaactggtttttgaatgagataccaaaatgaagatattgaaatggacaaacgtaatc |
49607678 |
T |
|
| Q |
207 |
acattcgtgaatctgaaagaccgtgaagatttact |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49607677 |
acattcgtgaatctgaaaggccgtgaagatttact |
49607643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 49613038 - 49612859
Alignment:
| Q |
28 |
ttcgacgtttgaattgtcttgcagcgcacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactat |
127 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
49613038 |
ttcgacgcttggtttgtcttgcagcgcacttcgcaaaggcgtgtttgcggtcggggctgtcttgaccttgttttcaatgttgacttcaattttgtactat |
49612939 |
T |
|
| Q |
128 |
tgggcacactgcaagaccgacacaactgatttttggatgagataccaaaatgaagatattgaaatggacaaacgtaatca |
207 |
Q |
| |
|
|||||| | ||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49612938 |
tgggcatattgcaaagctgacatcgctgatttttggatgagacaccaaaatgaagatattgaaatggacacacgtaatca |
49612859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 49603174 - 49603092
Alignment:
| Q |
54 |
cacttcgcaaatacgtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactattgggcacac |
136 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| | |||||| |||| | ||||||||||||||||||| |
|
|
| T |
49603174 |
cacttcgcaaaggtgtgtttgctgctggggctgccttgaccttgttctctatgttggcttctattttgtactattgggcacac |
49603092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 49623438 - 49623375
Alignment:
| Q |
68 |
gtgtttgctgccggggctgtcttgaccttgtttttaatgttgacttcgactttgtactattggg |
131 |
Q |
| |
|
||||||||||| || |||| ||||| |||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
49623438 |
gtgtttgctgctggagctgccttgatcttgttttcaatgttgacttctattttgtactattggg |
49623375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University