View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_2 (Length: 699)
Name: NF18907_low_2
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_2 |
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| [»] scaffold0022 (3 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 187 - 411
Target Start/End: Complemental strand, 66828 - 66604
Alignment:
| Q |
187 |
tagcattgacggagtttcggaacatcaaactcccaataactaacaacaccaaaaacccaatgagatgaagcgaaaaagaaccaaaatagctccggatcta |
286 |
Q |
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| T |
66828 |
tagcattgacggagctccggaacatcaaactcccaacaattaacaacaccaaaaacccaatgagatgaagcgaaaaagaaccaaaatagctccggatcta |
66729 |
T |
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| Q |
287 |
agcaaaaactcagatcaacccgtcaagaaaccgaaagacaacccaccacgtcccttgtaaagtcgtcggcgagaacgacggaggagggttaaacgctgag |
386 |
Q |
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| T |
66728 |
agcaaaaactcagattaacatgtcaagaaaccgaaagacaacccaccacgtcccttgtaaagtcgccggcgagaacgacagaggagggttaaacactgag |
66629 |
T |
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| Q |
387 |
gagctagtctcggcggcataacact |
411 |
Q |
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||||| ||||||| |||| |||||| |
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| T |
66628 |
gagctggtctcggtggcacaacact |
66604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 481 - 687
Target Start/End: Complemental strand, 66534 - 66320
Alignment:
| Q |
481 |
acatcgcaagctggatccaaatccatctaagaacggcgacgaagcgacggatccgaaaagagatgcggcggggtggaaacgatggtgcggagaaatggat |
580 |
Q |
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| T |
66534 |
acatcgcaaactggatccaaatgcatctaataacggcggcgatgcgacggatccgaaaagagatgcggagaggtggaaacgatggtgcggagaaatggat |
66435 |
T |
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| Q |
581 |
ctcgttgcaccaccactagtga--------aggctacatcgtgaaaacactagtattgatttgaaggtggatagaaaaagggtacaacgacggtgtctgt |
672 |
Q |
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| T |
66434 |
ctcgttgcaccaccactagtgaaggcgtgaaggctacatcgtgaaaacactagtattgatttgaaggtgaatagaaaaagggtacaacggcggtgtctgt |
66335 |
T |
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| Q |
673 |
ggtagaaggcggtgg |
687 |
Q |
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| T |
66334 |
ggtagaaggcggtgg |
66320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 66993 - 66891
Alignment:
| Q |
22 |
tgactcaccggcacaccaagccacgaggcaaaaatggaatccacaaagcaaaacggaccaccaaacagacaagaaaacaaccacaatctaaagactccca |
121 |
Q |
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|||||||||| |||||| || | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66993 |
tgactcaccgacacacccagtcgcgaggcaaaaatggaacccacaaagcaaaacgaaccaccaaacagacaagaaaacaaccacaatctaaagactccca |
66894 |
T |
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| Q |
122 |
atc |
124 |
Q |
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||| |
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| T |
66893 |
atc |
66891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 32747332 - 32747240
Alignment:
| Q |
22 |
tgactcaccggcacaccaagccacgaggcaaaaatggaatccacaaagcaaaacggaccaccaaacagacaagaaaacaaccacaatctaaag |
114 |
Q |
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| T |
32747332 |
tgactcaccagcgcagctagccgcgaggcaaaaatggaatccacaaagcaaaacggaccaccaaacagacaggaaaaccagcacaatctaaag |
32747240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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