View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_4 (Length: 556)
Name: NF18907_low_4
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Complemental strand, 42073596 - 42073061
Alignment:
| Q |
16 |
agaatctctactctcatgagcttccataagctctctttttagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagat |
115 |
Q |
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| T |
42073596 |
agaatctctactctcatgagcttccataagctctcttttaagcatctcaattgacataattcccatgtctttattaagaatctgagaaacttcctcagat |
42073497 |
T |
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| Q |
116 |
tctgttctatttggtgaaaaattctcattcttattcttgtgcttcttcttaaacttaggaaaaagccatgaaatcatccctttacttttgtgttgagttt |
215 |
Q |
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| T |
42073496 |
tctgttctatttggtgaaaaaatctcattcttattcttgtgcttcttcttaaacttaggaaaaagccatgaaatcatccctttacttttgtgttgagttt |
42073397 |
T |
|
| Q |
216 |
gaaatgatgcatgagaatcagtgagaggaacaacaatattagaactcctattgttgttttttgtgttgtcaaattcactagttatcaaagcaggtttaca |
315 |
Q |
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| T |
42073396 |
gaaatgatgcatgagaatcagtgagaggaacaacaatattagaactcctattgttgttttttgtgttgtcaaattcactagttatcaaagcaggtttaca |
42073297 |
T |
|
| Q |
316 |
cctattgcaagaagataagggtttaacatcatctaaactatttcttcttctagatttgaaatattcacta------ggtgatgtttgaagaactgtgatg |
409 |
Q |
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| T |
42073296 |
cctattgcaagaagataagggtttaacatcatctaaactatttcttcttctagatttgaaatattcattaggtgatggtgatgtttgaagaactgtgatg |
42073197 |
T |
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| Q |
410 |
ttatttgcacaagaacctgttactgattttgt---atcatcatcatcatcaataggacacatgtgtggttcctggtttagatttgttgaaaaaccaaaac |
506 |
Q |
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| T |
42073196 |
ttatttgcacaagaacctgttactgattttgtatcatcatcatcatcatcaataggacacatgtgtgattcctggtttagatttgttgaaaaaccaaaac |
42073097 |
T |
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| Q |
507 |
gtagtacctttcttgaacatgatttgtccttgtaat |
542 |
Q |
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| T |
42073096 |
gtagtacctttcttgaacatgatttgtccttgtaat |
42073061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 24876200 - 24876136
Alignment:
| Q |
384 |
taggtgatgtttgaagaactgtgatgttatttgcacaagaacctgttactgattttgtatcatca |
448 |
Q |
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| T |
24876200 |
taggcgatgtttgaagaacagttatatgatttgcacaagaaccggttacggatttggtgtcatca |
24876136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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