View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_5 (Length: 555)
Name: NF18907_low_5
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 47646265 - 47645969
Alignment:
| Q |
20 |
agaacctgcttcttatccctcagcaacaacctcaaaagattcgagcttgatctgagacaagtacttttgtgtcaaagtcactcctctccagttccatcaa |
119 |
Q |
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| T |
47646265 |
agaacctgcttcttatccctcagcaac---ctcaaaagattcgagcttgatatgagataagtacttttgtgtcaaagtcactcctctccagttccatcaa |
47646169 |
T |
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| Q |
120 |
caacatatcattgatttttcatcaactcaaaacttaaatccaataattactatttccaaacaagcactaagtgtatcagtattctttctaatgttaagcc |
219 |
Q |
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| T |
47646168 |
caacatatcattgatttttcatcaactcaaaacttaaatccaataattactatttccaaacaagcactaagtgtatcagtattctttcttatgttaagcc |
47646069 |
T |
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| Q |
220 |
attcttaatatcaaacttcaaactcactacaatttcaaaacatcaatagtcaaaaatattgtttcatatattcacatcacagcaattaattcctatgatc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47646068 |
attcttaatatcaaacttcaaactcactacaatttcaaaacatcaatggtcaaaaatattgtttcatatattcacatcacaacaattaattcctatgatc |
47645969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 362 - 543
Target Start/End: Complemental strand, 47645926 - 47645744
Alignment:
| Q |
362 |
ttgcagataatggttatacgactccatctgctttctgcattgt-actatacatgtacacgatcatttctcatcaaatgtagctaaagaaatattgctcaa |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645926 |
ttgcagataatggttatacgactccatctgctttctgcattgttactatacatgtccacgatcatttctcatcaaatgtagctaaagaaatattgctcaa |
47645827 |
T |
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| Q |
461 |
accaagttgagcatgagaattaattctactaatctcaccaattatttcatcaagtgcaactttatctttcaatattgaagtat |
543 |
Q |
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| T |
47645826 |
accaagttgagcatgagaattaattctactaatctcaccaattatttcatcaagtgcaactttatctttcaatattgaagtat |
47645744 |
T |
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