View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_8 (Length: 482)
Name: NF18907_low_8
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 87 - 466
Target Start/End: Complemental strand, 44692758 - 44692379
Alignment:
| Q |
87 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
186 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
44692659 |
T |
|
| Q |
187 |
ccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
286 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692658 |
ccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
44692559 |
T |
|
| Q |
287 |
taaattatttaacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggttt |
386 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692558 |
taaattatttaacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggttt |
44692459 |
T |
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| Q |
387 |
gacatagagaacaatctaggatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaac |
466 |
Q |
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| T |
44692458 |
gacatagagaacaatctagaatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaac |
44692379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 44692869 - 44692796
Alignment:
| Q |
20 |
tttcctcctcgcacaacacacatctaaccgaaacctccggggggagggcattcctcctacgaagattccaccgc |
93 |
Q |
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| T |
44692869 |
tttcctcctcgcacaacacacatctaaccgaaacctccggggggagggcattccttctacgaagattccaccgc |
44692796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 293
Target Start/End: Original strand, 34866434 - 34866639
Alignment:
| Q |
87 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
186 |
Q |
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||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||||||||| || ||||||| ||| |
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| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt |
34866533 |
T |
|
| Q |
187 |
ccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaa |
286 |
Q |
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| T |
34866534 |
-cgcatacatagatttcaccgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgttagaccacacatgcccctccaaatcttccaa |
34866632 |
T |
|
| Q |
287 |
taaatta |
293 |
Q |
| |
|
||||||| |
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| T |
34866633 |
taaatta |
34866639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 34866690 - 34866777
Alignment:
| Q |
326 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatattta |
413 |
Q |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatctaggatattta |
34866777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
| Q |
357 |
atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca |
439 |
Q |
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|||| ||||||||| ||||||||||||||| |||| | ||| ||||| ||||||||| | || |||| ||| ||||||||||| |
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| T |
12830121 |
atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca |
12830039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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