View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18907_low_9 (Length: 441)
Name: NF18907_low_9
Description: NF18907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18907_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 3924011 - 3924440
Alignment:
| Q |
1 |
ctggtggcaccctttttggaataacaccaacagcgaactttacatgaccaatgaacatacccgacgtcctgtctttcaagaaaacatcttcgttgctaga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
3924011 |
ctggtggcaccctttttggaatatcaccaacagcgaactttacatgaccaatgaacatacctgacgtcctgtctttcaagaaaacatctacgttgctaga |
3924110 |
T |
|
| Q |
101 |
gctattttttccattatcaaaagcaaacacttggttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttacgtttccaagtactacctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
3924111 |
gctattttttccattatcaaaagcaaacacttggttcaatgatgagttgctggtttctaagaaaaatgttgttgcttttgcgtttccaagtaccacctct |
3924210 |
T |
|
| Q |
201 |
acatagagattatggatattgggaaagtctatgacctttacaacccttacaaataagaactccatttcttcaacaaggtcatatctccttgtaagcttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3924211 |
acatagagattatggatattgggaaagtctatgacctttacaacccttacaaataagaattccatttcttcaacaaggtcatatctccttgtaagcttat |
3924310 |
T |
|
| Q |
301 |
cagcttcaaatgcagcattattgttaacactagtctcctttggtgcattctcattatttgccattttcttaacctgcattgtacaaataactttattagc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3924311 |
cagcttcaaatgcagcattattgttaacactagtctcctttggtgcattctcattatttgccattttcttaacctgcattgtacaaataactt--ttagc |
3924408 |
T |
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| Q |
401 |
tttattaccttatcatgcaagtgtagaataat |
432 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3924409 |
tttattaccttatcatgcaagtgtagaataat |
3924440 |
T |
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