View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18908_high_1 (Length: 841)

Name: NF18908_high_1
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18908_high_1
NF18908_high_1
[»] chr1 (37 HSPs)
chr1 (182-443)||(25987489-25987750)
chr1 (559-799)||(29678435-29678671)
chr1 (559-799)||(25987165-25987398)
chr1 (559-802)||(31292872-31293110)
chr1 (559-802)||(31585348-31585586)
chr1 (559-802)||(47140560-47140796)
chr1 (8-154)||(25987812-25987955)
chr1 (173-432)||(48378802-48379079)
chr1 (559-802)||(48379205-48379446)
chr1 (559-802)||(17562901-17563139)
chr1 (649-802)||(19884609-19884762)
chr1 (559-799)||(36728868-36729104)
chr1 (173-424)||(11894404-11894671)
chr1 (633-802)||(38264510-38264677)
chr1 (268-432)||(47140924-47141087)
chr1 (182-273)||(29677337-29677428)
chr1 (182-318)||(31584965-31585117)
chr1 (624-799)||(11894077-11894251)
chr1 (379-442)||(36728688-36728751)
chr1 (685-802)||(25294163-25294280)
chr1 (173-273)||(25293768-25293868)
chr1 (268-318)||(17562620-17562670)
chr1 (374-443)||(29678249-29678318)
chr1 (649-733)||(15378736-15378820)
chr1 (635-802)||(2191975-2192142)
chr1 (183-273)||(2191518-2191608)
chr1 (366-432)||(2191740-2191807)
chr1 (560-602)||(11894257-11894299)
chr1 (268-309)||(38264156-38264197)
chr1 (321-380)||(31292662-31292721)
chr1 (173-240)||(47141131-47141198)
chr1 (409-443)||(17562751-17562785)
chr1 (409-443)||(31585198-31585232)
chr1 (203-273)||(38264075-38264145)
chr1 (272-309)||(2191623-2191660)
chr1 (183-240)||(15379086-15379143)
chr1 (269-318)||(29677435-29677484)
[»] chr5 (24 HSPs)
chr5 (173-432)||(39206851-39207110)
chr5 (559-802)||(23429006-23429244)
chr5 (268-443)||(42837635-42837810)
chr5 (175-431)||(23429372-23429645)
chr5 (190-421)||(33742451-33742681)
chr5 (559-802)||(42836754-42836990)
chr5 (173-443)||(35188342-35188597)
chr5 (559-802)||(35188713-35188952)
chr5 (268-443)||(3926320-3926495)
chr5 (560-773)||(33742836-33743047)
chr5 (559-802)||(39207237-39207454)
chr5 (653-802)||(39800611-39800760)
chr5 (653-802)||(40056755-40056904)
chr5 (183-405)||(42878679-42878916)
chr5 (173-300)||(40057136-40057263)
chr5 (559-802)||(3925983-3926204)
chr5 (624-792)||(42879066-42879234)
chr5 (173-263)||(39800163-39800253)
chr5 (650-724)||(2209389-2209463)
chr5 (173-273)||(3926506-3926606)
chr5 (173-273)||(42837821-42837920)
chr5 (363-441)||(2209658-2209737)
chr5 (559-604)||(2209499-2209544)
chr5 (176-273)||(39886978-39887075)
[»] chr2 (26 HSPs)
chr2 (173-443)||(5110334-5110620)
chr2 (559-799)||(5109982-5110218)
chr2 (559-777)||(5704400-5704613)
chr2 (173-443)||(13626031-13626317)
chr2 (182-443)||(5704729-5705000)
chr2 (268-443)||(13807671-13807846)
chr2 (566-799)||(13626421-13626650)
chr2 (176-443)||(31575662-31575945)
chr2 (190-443)||(45150974-45151242)
chr2 (559-762)||(31576061-31576263)
chr2 (639-802)||(5938507-5938670)
chr2 (653-802)||(42625222-42625370)
chr2 (182-273)||(5938989-5939080)
chr2 (182-300)||(42622396-42622514)
chr2 (699-802)||(13807344-13807447)
chr2 (559-608)||(13807506-13807555)
chr2 (559-607)||(5938690-5938738)
chr2 (704-795)||(31604611-31604702)
chr2 (559-608)||(45151358-45151407)
chr2 (389-443)||(5938854-5938908)
chr2 (268-334)||(5938912-5938978)
chr2 (212-273)||(13807857-13807918)
chr2 (640-724)||(45458578-45458662)
chr2 (739-798)||(45151515-45151574)
chr2 (651-764)||(38724559-38724672)
chr2 (624-688)||(45151418-45151480)
[»] chr3 (21 HSPs)
chr3 (559-802)||(13825680-13825918)
chr3 (560-802)||(25874825-25875063)
chr3 (173-443)||(25874420-25874707)
chr3 (559-802)||(27926741-27926979)
chr3 (173-430)||(27926352-27926623)
chr3 (173-441)||(5295336-5295625)
chr3 (559-802)||(5294992-5295218)
chr3 (173-432)||(21288233-21288503)
chr3 (653-802)||(12148804-12148953)
chr3 (559-802)||(21287887-21288107)
chr3 (173-346)||(3778696-3778884)
chr3 (268-354)||(13826266-13826352)
chr3 (632-794)||(48251834-48251995)
chr3 (643-802)||(4127772-4127932)
chr3 (173-273)||(12149296-12149396)
chr3 (392-443)||(13826034-13826085)
chr3 (190-240)||(13826396-13826446)
chr3 (649-802)||(36584168-36584321)
chr3 (366-441)||(36584501-36584577)
chr3 (183-263)||(48251216-48251296)
chr3 (635-697)||(26187804-26187866)
[»] chr4 (41 HSPs)
chr4 (560-802)||(19841514-19841751)
chr4 (183-443)||(38951748-38952024)
chr4 (560-802)||(38951393-38951631)
chr4 (559-802)||(41039105-41039345)
chr4 (182-443)||(19841856-19842133)
chr4 (561-777)||(22278107-22278322)
chr4 (650-802)||(23626627-23626779)
chr4 (173-300)||(40568655-40568782)
chr4 (649-802)||(51356954-51357106)
chr4 (649-802)||(8819505-8819657)
chr4 (339-432)||(41039471-41039564)
chr4 (323-423)||(22278460-22278560)
chr4 (173-273)||(41041750-41041850)
chr4 (653-802)||(40572101-40572248)
chr4 (628-760)||(17120465-17120597)
chr4 (190-273)||(22279315-22279397)
chr4 (268-318)||(43624597-43624647)
chr4 (373-441)||(23626968-23627037)
chr4 (182-263)||(29117328-29117409)
chr4 (370-441)||(51357297-51357369)
chr4 (271-354)||(40714653-40714736)
chr4 (560-724)||(17120403-17120561)
chr4 (559-608)||(29116983-29117032)
chr4 (173-273)||(36464519-36464619)
chr4 (639-802)||(42555103-42555257)
chr4 (559-608)||(43624373-43624424)
chr4 (363-441)||(17120231-17120309)
chr4 (649-800)||(36465017-36465167)
chr4 (395-441)||(40714806-40714853)
chr4 (370-432)||(42555450-42555513)
chr4 (363-432)||(33340712-33340782)
chr4 (370-440)||(36464760-36464831)
chr4 (370-441)||(8819241-8819313)
chr4 (559-605)||(8819431-8819477)
chr4 (559-605)||(36464943-36464989)
chr4 (559-605)||(40714971-40715017)
chr4 (559-605)||(42555277-42555323)
chr4 (173-259)||(42555663-42555749)
chr4 (559-605)||(51357134-51357180)
chr4 (212-253)||(43624675-43624716)
chr4 (268-309)||(51357458-51357499)
[»] chr8 (25 HSPs)
chr8 (561-802)||(7987347-7987582)
chr8 (559-802)||(36583008-36583245)
chr8 (268-443)||(11481543-11481718)
chr8 (561-803)||(7968555-7968791)
chr8 (182-443)||(8226968-8227248)
chr8 (173-443)||(9762645-9762931)
chr8 (173-442)||(7986921-7987206)
chr8 (650-802)||(31005788-31005940)
chr8 (170-273)||(7968177-7968280)
chr8 (173-273)||(36582650-36582750)
chr8 (649-764)||(13355612-13355727)
chr8 (565-802)||(8227370-8227584)
chr8 (694-790)||(9765250-9765346)
chr8 (649-799)||(11481208-11481358)
chr8 (365-432)||(36582829-36582896)
chr8 (183-273)||(28211643-28211733)
chr8 (173-263)||(31006354-31006444)
chr8 (358-442)||(7968350-7968434)
chr8 (559-605)||(9763047-9763093)
chr8 (559-608)||(13355764-13355813)
chr8 (175-263)||(6870321-6870409)
chr8 (370-432)||(31006144-31006207)
chr8 (365-441)||(6870554-6870631)
chr8 (271-311)||(7968294-7968334)
chr8 (340-443)||(13355929-13356031)
[»] chr6 (26 HSPs)
chr6 (559-802)||(8576522-8576760)
chr6 (173-443)||(10788602-10788887)
chr6 (559-799)||(7622139-7622374)
chr6 (635-802)||(5999314-5999472)
chr6 (649-802)||(28581920-28582075)
chr6 (649-802)||(34435002-34435155)
chr6 (268-393)||(8576914-8577039)
chr6 (649-802)||(35167915-35168068)
chr6 (625-760)||(642234-642371)
chr6 (705-802)||(10409193-10409290)
chr6 (173-273)||(7622614-7622714)
chr6 (689-798)||(10788346-10788457)
chr6 (173-262)||(641748-641837)
chr6 (173-271)||(28582478-28582576)
chr6 (340-432)||(35167186-35167279)
chr6 (730-802)||(32292665-32292737)
chr6 (374-443)||(641971-642041)
chr6 (173-263)||(35167005-35167095)
chr6 (559-608)||(35167406-35167455)
chr6 (396-441)||(7622486-7622531)
chr6 (559-608)||(34433722-34433771)
chr6 (200-272)||(8577051-8577123)
chr6 (559-591)||(10788454-10788486)
chr6 (268-318)||(10408771-10408821)
chr6 (567-608)||(642183-642223)
chr6 (410-443)||(8576876-8576909)
[»] chr7 (39 HSPs)
chr7 (182-432)||(38440138-38440404)
chr7 (185-443)||(23809405-23809679)
chr7 (559-802)||(7766832-7767074)
chr7 (559-802)||(23809795-23810034)
chr7 (182-421)||(5973136-5973391)
chr7 (559-802)||(33189165-33189402)
chr7 (559-802)||(38440561-38440797)
chr7 (633-790)||(25501927-25502084)
chr7 (182-443)||(11038913-11039190)
chr7 (662-802)||(30541697-30541837)
chr7 (173-300)||(27337282-27337409)
chr7 (625-802)||(11039367-11039543)
chr7 (653-802)||(27336714-27336863)
chr7 (649-802)||(2944272-2944425)
chr7 (173-273)||(33189630-33189730)
chr7 (173-443)||(30541205-30541490)
chr7 (173-263)||(36299124-36299214)
chr7 (699-798)||(5972756-5972855)
chr7 (183-270)||(7767309-7767396)
chr7 (649-802)||(22519394-22519547)
chr7 (381-443)||(25502257-25502319)
chr7 (370-441)||(36298903-36298975)
chr7 (649-724)||(36298628-36298703)
chr7 (173-263)||(1052778-1052868)
chr7 (559-608)||(25502102-25502151)
chr7 (370-441)||(31457392-31457464)
chr7 (559-607)||(11039306-11039355)
chr7 (559-608)||(40910612-40910661)
chr7 (559-679)||(5972857-5972971)
chr7 (559-605)||(15954754-15954800)
chr7 (371-432)||(22519130-22519192)
chr7 (559-608)||(30541606-30541655)
chr7 (182-263)||(47925156-47925237)
chr7 (201-273)||(2943798-2943869)
chr7 (559-607)||(2944195-2944243)
chr7 (559-597)||(31457228-31457266)
chr7 (268-309)||(1052892-1052933)
chr7 (721-802)||(1053355-1053436)
chr7 (268-309)||(15953904-15953945)
[»] scaffold0691 (1 HSPs)
scaffold0691 (653-802)||(7689-7838)
[»] scaffold0115 (2 HSPs)
scaffold0115 (653-802)||(21836-21985)
scaffold0115 (173-273)||(22286-22386)
[»] scaffold0155 (5 HSPs)
scaffold0155 (181-314)||(6672-6821)
scaffold0155 (559-608)||(7008-7057)
scaffold0155 (639-712)||(7085-7158)
scaffold0155 (371-443)||(6820-6892)
scaffold0155 (731-802)||(7162-7232)
[»] scaffold0634 (1 HSPs)
scaffold0634 (173-273)||(8989-9089)
[»] scaffold0057 (2 HSPs)
scaffold0057 (649-802)||(66369-66522)
scaffold0057 (380-441)||(66644-66706)
[»] scaffold0246 (1 HSPs)
scaffold0246 (704-764)||(10777-10837)
[»] scaffold0041 (1 HSPs)
scaffold0041 (559-608)||(62433-62482)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 182 - 443
Target Start/End: Complemental strand, 25987750 - 25987489
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaac 281  Q
    ||||||| ||||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  25987750 cttaatggatatctatggataaaataaatgaattttttaactacccgctaattaatggatacaaatgtggatttaatggtatccacacccgctattaaac 25987651  T
Q  282 cgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaag 381  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||     
T  25987650 cgattaaattacataaatatcctcaatatcattcaacattctaagaaaacaccctagatattgtgagtgttatcagttattacgctcttttaaaagaaaa 25987551  T
Q  382 tgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25987550 tgaaaatggttgggattgatgaagcaagagctttgtttttgttgaatatgacgagctttact 25987489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 559 - 799
Target Start/End: Original strand, 29678435 - 29678671
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaatttt-ttattttatttatataaatgt 657  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |             ||||||||||||| ||||||||||| |||||||||    
T  29678435 ctaaaaagaaaagaaaatgcatgtgaagaacttttgtttctaaattttagctaaaaaaaa-----ttaaacaaatttttttattttatttttataaatgt 29678529  T
Q  658 tatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcata 757  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||    
T  29678530 tatccatggatatctgtataaacccgtggatacctcaaaatccgcggattacccattaaacggatatccgcgcggatatggatagggtatggatttcata 29678629  T
Q  758 tttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    ||||||  |||||||||||| |||||||| |||||| |||||    
T  29678630 tttatccaacggagcggacacatatatcatactatctgcatc 29678671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 559 - 799
Target Start/End: Complemental strand, 25987398 - 25987165
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  25987398 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagataaaaaaataaaaattaaacaaattttttattttatttatataaatgtt 25987299  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    || |||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||| |||||||||| |||| | |||  ||||||||     
T  25987298 atacatggatatctatataaat-------tacctcaaaatccgcagtttacccgttaaacggatatctgtgcggatatggataagatacatatttcatac 25987206  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    |||||| ||||||||||||  ||||||||||||||| ||||    
T  25987205 ttatctaacggagcggacacgtatatcacactatccacatc 25987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 31292872 - 31293110
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  31292872 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttttaaattttagttaaaaaaaa-----ttaaacaaattttttattttatttttataaatgtt 31292966  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| ||||||||||||||||||| |||||||   ||||| ||| |||| |||||||||  | ||||| |||||| | ||||||||||||    
T  31292967 atccatggatatctgtataaatccgcggatacctaaaaatccatggattatccgctaaatggatatccgcacagatatggataggctgcggatttcatat 31293066  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||||||| ||| |||||||| |||||||||||||    
T  31293067 ttatctaacggagcggatataaatatcacattatccgcatccat 31293110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 31585348 - 31585586
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||| |              ||||||||||||||||||||||| ||||||||||    
T  31585348 ctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaattttagctaaaaaaaag-----taaacaaattttttattttatttttataaatgtt 31585442  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||| |||||| |||||| |||||||||| |||||||| || ||||||||| |||||||||||||| |  ||||| |||||||||||||||| ||||    
T  31585443 atccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatatccgcgttgatatggatagggtacggattttatat 31585542  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||||||||   |||| |||||||||||||||||    
T  31585543 ttatctaacggagcggacaaggatattacactatccgcatccat 31585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 47140796 - 47140560
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |             ||||| |||||    ||||||||| ||||||||||    
T  47140796 ctaaaatgaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaaaat---ttaaaaaaatt----attttatttttataaatgtt 47140704  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| || ||| |||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||| | || |||||||||||    
T  47140703 atccatggatatctgtacaaacccgcggatacctcaaaatccgcggattacccgctaaacgaatatccgcgcggatatagataagatatggatttcatat 47140604  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||  ||||||||||||   ||||||||||||||||||||||    
T  47140603 ttatccaacggagcggacacgaatatcacactatccgcatccat 47140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 25987955 - 25987812
Alignment:
Q  8 cgaagaatatgataaagcataaaaggcaatctcacacttaaaa-tattcacaactaaaatactaatttgactacagcaatatcttaaataattagtaaga 106  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||   |||||||||||||||||| |||    
T  25987955 cgaaaaatatgataaagcataaaaggcaatctcacacttaaaaatattcacaactaaa-tactaatttgactaca---atatcttaaataattagtcaga 25987860  T
Q  107 agtaacaaaaacattgcaacacaacttagacccataattagggatggc 154  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  25987859 agtaacaaaaacattgcaacacaacttagacccataattatggatggc 25987812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 173 - 432
Target Start/End: Original strand, 48378802 - 48379079
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||    
T  48378802 agcggatagcttaatgaatatccatggataaaataaacggattttttaactacccgctaattaatggatacatatgcggatttaatgatattcacgcccg 48378901  T
Q  273 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatat--tgtgagtgttat 354  Q
    |                |||||||| || ||| |||||| |||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||||||||    
T  48378902 cggacatccataccctctattaaactgagtaagttacatcaataacctcaatatcattcaacttcctaagaaaacaccctagatatattgtgagtgttat 48379001  T
Q  355 caattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    || |||| |||||| |||||||| || ||||| ||||||||||||||||||||| || |||| || ||||||||||||    
T  48379002 cagttattacgctcctttaaaaggaaatgaaagtggttgggattgttgaagcaaaagttttgcttatgttgaatatga 48379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 48379205 - 48379446
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||| |             | |||||||  ||||||||||||| ||||||||||    
T  48379205 ctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaattttagctaaaaaaaaaaa--tcaaacaaaaattttattttatttttataaatgtt 48379302  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||| |||||||||||| ||||||||| ||||||| | ||||  ||||||||  ||||||| |||| ||||||||||||||||    
T  48379303 atccatggatatctgtataaacccgcggatacctaaaaatccgcggattacctgctaaattgatatccgcacggatatggatatggtacggatttcatat 48379402  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||||||||   || |||||||||||||||||||    
T  48379403 ttatctaacggagcggacacggatttcacactatccgcatccat 48379446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 17562901 - 17563139
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||| |              ||||||||||||||||||||||| ||||||||||    
T  17562901 ctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaattttagctaaaaaaaag-----taaacaaattttttattttatttttataaatgtt 17562995  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||| |||||| |||||| |||||||||| |||||||| || ||||||||| ||||||||| |||| |  ||||| ||||||||| |||||| ||||    
T  17562996 atccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatgtccgcgttgatatggatagggtatggattttatat 17563095  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| || ||||||||| | |||| |||||||||||||||||    
T  17563096 ttatctaacagagcggacaaagatattacactatccgcatccat 17563139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 19884609 - 19884762
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||| ||||||||| | |||| ||||||||||||||||||| | |    
T  19884609 tataaatgttatccatggatatctatataaacccgcggatacctcaaaattcgtggattccccgttaaatgaatattcgtgcggatatagatagggcatg 19884708  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||| ||  |||||||||||| | ||||||||||||||||||||||    
T  19884709 aatttcatatttgtccaacggagcggacacagatatcacactatccgcatccat 19884762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 559 - 799
Target Start/End: Original strand, 36728868 - 36729104
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaatttt-ttattttatttatataaatgt 657  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || |             ||||||||||||| ||||||||||| |||||||||    
T  36728868 ctaaaaagaaaagaaaatgcatgtgaagaacatttgtttctaaatttcagttaaaaaaaa-----ttaaacaaatttttttattttatttttataaatgt 36728962  T
Q  658 tatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcata 757  Q
    |||||||| |||| | ||| || | |||||||  ||||||||||| || |||||| ||||||||||||||  ||||||| ||||||||||| ||||||||    
T  36728963 tatccatgaatatttgtatgaacctgcggatatgtcaaaatccgcggactacccgctaaacggatatccgcacggatattgatagggtacgaatttcata 36729062  T
Q  758 tttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    ||||||  ||||| ||||||   |||||||||||||||||||    
T  36729063 tttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 173 - 424
Target Start/End: Complemental strand, 11894671 - 11894404
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||| ||| |||||||||||  |||||||||||||| ||||||||||||| |   |||||||||||| ||||| ||||||||    
T  11894671 agcggataccttaatggatatcaatggataaaataaatgaattttttaactacctgctaattaatggatatggatgcggatttaacggtatccacacccg 11894572  T
Q  273 ----------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
                    |||||||||||| ||||||||||||||||||| ||||||||||||| |  ||| |||| ||| ||  |||||||||||||||      
T  11894571 tggatatccataccgactattaaaccgagtaaattacataaataaccttaatatcattcaacttcctaaaaaaaaaccttatgtattgtgagtgttattt 11894472  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgtt 424  Q
     |||| || |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  11894471 gttattacactcttttaaaaggaagtgaaagtggttgggattgttgatgcaagagctttgtttttgtt 11894404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 633 - 802
Target Start/End: Original strand, 38264510 - 38264677
Alignment:
Q  633 ttttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcgg 732  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||| ||||||| ||  ||||||| | |||||||||||| | ||||    
T  38264510 ttttttatttt-ttta-ataaatgttatccatggatatctgtataaacccgcggatacttcaaaattcgtggattaccggctaaacggatatctgcgcgg 38264607  T
Q  733 atatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||| ||||||| ||||||||||||||| ||| ||||| |||||| |||||||||| |||||| ||||||    
T  38264608 atatggatagggcacggatttcatatttgtctaacggaacggacacatatatcacagtatccgtatccat 38264677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 268 - 432
Target Start/End: Complemental strand, 47141087 - 47140924
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||||||| ||| ||||||| |||||||| || |||| |||||||| |  |||||||| |||||   ||||||||||||||| | |||| |||||    
T  47141087 acccgctattaaatcgagtaaattaaataaataatcttaataccattcaacttcctaagaaaaaaccctcg-tattgtgagtgttattagttattacgct 47140989  T
Q  368 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    ||||||| || |||||||||| ||||||||||||||  ||||| |||||||||||||||||||||    
T  47140988 cttttaataggaagtgaaaatagttgggattgttgacccaagaactttgtttttgttgaatatga 47140924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 29677337 - 29677428
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||  |||||||||||||||||| |||||||||    
T  29677337 cttaatggatatccatggataaaataaatggattttttaactacccgcaaattaatggatacggatgcggatttaatggtatccacacccgc 29677428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 31584965 - 31585117
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcac-------------- 267  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||  |||||||||||||| ||| |||                  
T  31584965 cttaatggatatccatggataaaataaatgggttttttaactacccgctaattaatggatacggatgcggatttaatgatatccacacccgcggatatcc 31585064  T
Q  268 --acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 318  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31585065 atacccgctattaaaccgattaaattacataaataacatcaatatcattcaac 31585117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 624 - 799
Target Start/End: Complemental strand, 11894251 - 11894077
Alignment:
Q  624 ttaaacaaattttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggata 723  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| | ||||||  | |  ||| ||||||||| |  ||||||||| ||||| ||||    
T  11894251 ttaaacaaattttttattttatttttataaatgttatcaatgaatatatctataaacactcaaatatctcaaaatctgtggattacccgctaaacagata 11894152  T
Q  724 tccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    ||||| | |||||  ||| ||||| |||||||||||||||  | ||| | |||| | |||| ||||||||||||||    
T  11894151 tccgtac-gatatgaatatggtacagatttcatatttatccaatggaacagacacaaatattacactatccgcatc 11894077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 36728688 - 36728751
Alignment:
Q  379 aagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttac 442  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  36728688 aagtgaaagtggttgggattgttgaagcaagagctttgtttttgttgaatatgatgaactttac 36728751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 685 - 802
Target Start/End: Original strand, 25294163 - 25294280
Alignment:
Q  685 ggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatat 784  Q
    ||||| ||||||||||   ||||| ||| |||| |||||||||   |||||| |||||||||| |||||||||||||||| |||||| |||||   ||||    
T  25294163 ggatatctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacagatttcatatttatctaacggagtggacacggatat 25294262  T
Q  785 cacactatccgcatccat 802  Q
    ||||||||||||||||||    
T  25294263 cacactatccgcatccat 25294280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 25293768 - 25293868
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| |||||||   ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  25293768 agcggataccttaatggatatccacagataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 25293867  T
Q  273 c 273  Q
    |    
T  25293868 c 25293868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 17562620 - 17562670
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 318  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17562620 acccgctattaaaccgattaaattacataaataacatcaatatcattcaac 17562670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 29678249 - 29678318
Alignment:
Q  374 aaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    |||| |||||||| ||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  29678249 aaaggaagtgaaagtggttaggattgttgaagcaagagtcttgtttttgttgaatatgatgagctttact 29678318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 733
Target Start/End: Complemental strand, 15378820 - 15378736
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcgga 733  Q
    |||||||||||||||||||||| | ||||||||||  |||||||||||||||   ||||||||| |||| ||||||||| |||||    
T  15378820 tataaatgttatccatggatatttgtataaatccgttgatacctcaaaatccatggattacccgctaaatggatatccgcgcgga 15378736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 635 - 802
Target Start/End: Original strand, 2191975 - 2192142
Alignment:
Q  635 ttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggat 734  Q
    |||| |||||||  |||||||  ||| ||||||||||| ||||||  ||| |||||||||||||| |  ||||| | | |||| |||| | || ||||||    
T  2191975 tttttttttattattataaatagtattcatggatatctgtataaactcgcagatacctcaaaatctgtggattatctgctaaatggatgttcgcgcggat 2192074  T
Q  735 atagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    || ||||||  |  |||||||||||| ||| | ||||||||||   |||||||| |||||||||||||    
T  2192075 atggataggacatagatttcatatttgtctaatggagcggacacggatatcacattatccgcatccat 2192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 2191518 - 2191608
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    |||||| ||||||||| ||||||||||  ||| ||||| ||||| | ||||||||||| ||| |||| ||||||||||||| | |||||||    
T  2191518 ttaatggatatccatggataaaataaacggatattttatctacctgttaattaatggatacagatgcagatttaatggtatccgcacccgc 2191608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 2191740 - 2191807
Alignment:
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 432  Q
    |||||||| |||  ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||    
T  2191740 ctcttttagaaggtagtgaaagtggtcgggattgttgaagcaagaagttttgtttttgttgaatatga 2191807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 11894299 - 11894257
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 602  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  11894299 taaaaagaaaagaaaatgcatatgaagaacctttgtctctaaa 11894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 38264156 - 38264197
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaata 309  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  38264156 acccgctattaaaccaattaaattacataaataaccttaata 38264197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 31292662 - 31292721
Alignment:
Q  321 tataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaa 380  Q
    |||||||||||||| ||| ||||||||||||||| | |||| |||||| ||| |||||||    
T  31292662 tataagaaaacaccataagtattgtgagtgttattagttattacgctcctttgaaagaaa 31292721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 47141198 - 47141131
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatgga 240  Q
    |||||||  ||||||| ||||||||| |||||||||   |||||||| |||||||| |||||||||||    
T  47141198 agcggataccttaatggatatccatggataaaataagcggatttttttactacccgttaattaatgga 47141131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 17562751 - 17562785
Alignment:
Q  409 gagctttgtttttgttgaatatgacgagctttact 443  Q
    |||||||||||||||||||||||| ||||||||||    
T  17562751 gagctttgtttttgttgaatatgatgagctttact 17562785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 31585198 - 31585232
Alignment:
Q  409 gagctttgtttttgttgaatatgacgagctttact 443  Q
    |||||||||||||||||||||||| ||||||||||    
T  31585198 gagctttgtttttgttgaatatgatgagctttact 31585232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 38264075 - 38264145
Alignment:
Q  203 aaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    |||||||| ||| ||||||||||||||||||||||||| |   ||| | |||||||||||| | |||||||    
T  38264075 aaataaatggatattttaactacccgctaattaatggatatggatgtgaatttaatggtatccgcacccgc 38264145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 2191623 - 2191660
Alignment:
Q  272 gctattaaaccgattaaattacataaataacctcaata 309  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  2191623 gctattaaaccgaataaattacataaataaccttaata 2191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 15379143 - 15379086
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatgga 240  Q
    |||||| ||||||||| || |||||||  ||| |||||||| ||||||||||||||||    
T  15379143 ttaatggatatccatggatcaaataaacggatattttaactgcccgctaattaatgga 15379086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 29677435 - 29677484
Alignment:
Q  269 cccgctattaaaccgattaaattacataaataacctcaatatcattcaac 318  Q
    ||||||||||||||   ||||||||||||||||| | |||||||||||||    
T  29677435 cccgctattaaaccaggtaaattacataaataactttaatatcattcaac 29677484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 2e-82; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 173 - 432
Target Start/End: Original strand, 39206851 - 39207110
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  39206851 agcggataccttaatggatatcgatggataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacccg 39206950  T
Q  273 ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttt 372  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |  |||||||||||||||  ||||||||||||||||| |||| || ||| |||    
T  39206951 ctattaaaccgagtaaattacataaataatctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacactccttt 39207050  T
Q  373 aaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    ||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  39207051 aaaaggaagtggaagtggttgggattgttgaagtaagagctttgtttttgttgaatatga 39207110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 23429244 - 23429006
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||| ||||||||||    
T  23429244 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag-----caaaaaacaattaaacaaattttttattttatttttataaatgtt 23429150  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||| | ||||||  ||||||||||| ||||||||  |||| |||| |||| |||||||||  ||||||| |||||||||||||||||||||    
T  23429149 atccatggatatatgtataaactcgcggatacctaaaaatccgtggattgcccgctaaatggatatccgcacggatatggatagggtacggatttcatat 23429050  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||||  |||||| ||||   ||||||||||||||||||||||    
T  23429049 ttatctatcggagcagacaaggatatcacactatccgcatccat 23429006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 42837810 - 42837635
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||| || ||||||||||||||| ||||| |||||||||||| |||| |||||    
T  42837810 acccgctattaaaccgagtaaattacataaataatctccatatcattcaactttctaagaaaacaccctagatattatgagtgttatcagttattacgct 42837711  T
Q  368 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    | |||||||| |||||||| ||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||    
T  42837710 cctttaaaaggaagtgaaagtggttgggattgttgaagcaaaaactttgtttatgttgaatatgatgagctttact 42837635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 175 - 431
Target Start/End: Complemental strand, 23429645 - 23429372
Alignment:
Q  175 cggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacac----- 269  Q
    ||||| |||||||| |||||||||||||| |||||  |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||         
T  23429645 cggatatcttaatggatatccatgaataacataaacggattttttaactactcgctaattaatggatacagatgcggatttaatggtattcacacccgca 23429546  T
Q  270 -----ccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcac 364  Q
         |||||||||||| || ||||||||||||||||||||| ||||||||||| |  ||||||||| |||||| ||||||||| ||||||| |||| ||    
T  23429545 tttacccgctattaaactgagtaaattacataaataacctcagtatcattcaacttcctaagaaaactccctaagtattgtgagggttatcagttattac 23429446  T
Q  365 gctcttttaaaagaaagtgaaaatgg-------ttgggattgttgaagcaagagctttgtttttgttgaatatg 431  Q
    |||  |||||||| |||||||| |||       || ||||||||||||||| ||||||||||  ||||||||||    
T  23429445 gcttctttaaaaggaagtgaaagtggttcgaaattaggattgttgaagcaaaagctttgtttacgttgaatatg 23429372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 190 - 421
Target Start/End: Original strand, 33742451 - 33742681
Alignment:
Q  190 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaaccgattaaa 289  Q
    ||||||||| ||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||| |||| |||| ||||||||||||||||| || ||||    
T  33742451 atatccatggataaaataaatggattttttaactatc-gttaattaatggatacagatgcggatgtaattgtatccacacccgctattaaacagagtaaa 33742549  T
Q  290 ttacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatg 389  Q
    ||||||||||||||| ||||||||||||| |  |||||||||||||||  |||||| |||||||| | |||| |  ||| |||||||| |||||||| ||    
T  33742550 ttacataaataaccttaatatcattcaacttcctaagaaaacaccctaggtattgtaagtgttattagttattatactcctttaaaaggaagtgaaagtg 33742649  T
Q  390 gttgggattgttgaagcaagagctttgttttt 421  Q
    |||| |||||||||||||| || ||| |||||    
T  33742650 gttgagattgttgaagcaaaagtttttttttt 33742681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 42836990 - 42836754
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |             ||||||||||||||||||| |||| ||||||||||    
T  42836990 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaa------ttaaacaaattttttattt-atttttataaatgtt 42836898  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||| |||||| | |||| |||||||||||| ||| ||| | ||||| |||||||| ||||||| |  ||||||| |||| |||||  |||||||||    
T  42836897 atccatgaatatctgtgtaaacccgcggatacctaaaactcctcggattatccgttaaatggatatctgcacggatatggatatggtacatatttcatat 42836798  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||||||||| | ||||||||||||||||||||||    
T  42836797 ttatctaacggagcggacacagatatcacactatccgcatccat 42836754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 35188342 - 35188597
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||| |||||| ||||||||    
T  35188342 agcggataccttaatggatatccatggataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttagtggtatccacacccg 35188441  T
Q  273 ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttt 372  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |               ||  ||||||||||||||||| |||| | |||| |||    
T  35188442 ctattaaaccgagtaaattacataaataacctcaatatcattcaactt---------------taggtattgtgagtgttatcagttattatgctccttt 35188526  T
Q  373 aaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||  || ||||| | |||| |||||||||||||| |||||| ||| |||||||||| | ||||||||||    
T  35188527 aaaatgaaatgaaagttgttgagattgttgaagcaaaagctttatttatgttgaatataatgagctttact 35188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 35188713 - 35188952
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| |             | |||||||||||||||||||||| ||||||||||    
T  35188713 ctaaaaagaaaagaaaatacatgtgaataacctttgtttctaaattttagttaaaaaaaat----taaaacaaattttttattttatttttataaatgtt 35188808  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||| | |||||| | |||||||||| |||||||   ||||| ||| |||| |||||| ||  |||||||||||||| ||| ||||||||||    
T  35188809 atccatggatatttgtataaacctgcggatacctaaaaatccatggattatccgctaaatggatattcgcacggatatagataggatacagatttcatat 35188908  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||||||||   ||||||||||||||||||||||    
T  35188909 ttatctaacggagcggacacgaatatcacactatccgcatccat 35188952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 3926495 - 3926320
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |  |||||||||||| || |||||||||||||||||| |||| | |||    
T  3926495 acccgctataaaatcgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccatagatattgtgagtgttatcagttattatgct 3926396  T
Q  368 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    | |||||||| |||| ||| ||||||||||||||||||||| || |||||||  ||||||||||| ||||||||||    
T  3926395 catttaaaaggaagtaaaagtggttgggattgttgaagcaaaagttttgtttacgttgaatatgatgagctttact 3926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 560 - 773
Target Start/End: Original strand, 33742836 - 33743047
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtta 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||| |||||||||||||| || ||||||||    
T  33742836 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag--caaacaaaaaaaattaaacaaaatttttattttatttttacaaatgtta 33742933  T
Q  660 tccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatt 759  Q
    ||||||||||||| |||||| ||||  |||||||||||||| | ||||||||| |||| |||||||    ||||||| ||||||||||||||| ||||||    
T  33742934 tccatggatatctgtataaacccgcatatacctcaaaatccacggattacccgctaaaaggatatcgacacggatatggatagggtacggattacatatt 33743033  T
Q  760 tatctgacggagcg 773  Q
    ||| | ||||||||    
T  33743034 tatgtaacggagcg 33743047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 39207237 - 39207454
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |             |||||||| ||||||||||||||| ||||||||||    
T  39207237 ctaaaaagaaaagaaattgcatgtgaagaacctttgtttctaaattttagctaaaaaaaa-----ttaaacaa-ttttttattttatttttataaatgtt 39207330  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||||||||||                    |||||||||| ||||||||| ||||||||||||||  ||||||| || ||||||||||||||||||    
T  39207331 atccatggatatct--------------------caaaatccgcggattacccgctaaacggatatccgcacggatatggaaagggtacggatttcatat 39207410  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||| ||||   ||||||||||||||||||||||    
T  39207411 ttatctaacggagcagacacggatatcacactatccgcatccat 39207454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 653 - 802
Target Start/End: Original strand, 39800611 - 39800760
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||   ||||| ||| |||| ||||||| |   |||||| |||||||||||||||    
T  39800611 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatctgcatggatatggatagggtacggatt 39800710  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    | |||||||||| |||||| |||||   ||||||||||||||||||||||    
T  39800711 ttatatttatctaacggagtggacacggatatcacactatccgcatccat 39800760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 653 - 802
Target Start/End: Complemental strand, 40056904 - 40056755
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||   ||||| ||| |||| |||||||||   |||||| ||||||||||| |||    
T  40056904 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacgaatt 40056805  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| |||||| ||| |   ||||||||||||||||||||||    
T  40056804 tcatatttatctaacggagtggaaacggatatcacactatccgcatccat 40056755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 42878679 - 42878916
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc----------- 271  Q
    |||||||||||||||  ||||||||||  |||||||||| |||||  ||||||||||| |  ||||||||||||||||||| |||||||               
T  42878679 ttaatgaatatccatagataaaataaacggattttttaaatacccattaattaatggatatgaatgcggatttaatggtatccacacccgcggatatcca 42878778  T
Q  272 -----gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgc 366  Q
         ||||||||||||| ||||||||||||||||||| |||| |||||||| || |||||||| | ||||   ||||| || ||||| | |||| ||||    
T  42878779 tacccgctattaaaccgagtaaattacataaataaccttaataccattcaactttctaagaaaa-aacctaggcattgttagcgttattagttattacgc 42878877  T
Q  367 tcttttaaaagaaagtgaaaatggttgggattgttgaag 405  Q
    || |||||||| |||||||| |||||| |||||||||||    
T  42878878 tcctttaaaaggaagtgaaagtggttgagattgttgaag 42878916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 40057263 - 40057136
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||| | | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  40057263 agcggataccttaatggatatctacggataaaataaatagatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 40057164  T
Q  273 ctattaaaccgattaaattacataaata 300  Q
    ||||||||| || | |||||| ||||||    
T  40057163 ctattaaactgagtgaattacgtaaata 40057136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 3926204 - 3925983
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |             ||||||||||||||| | || ||| ||||||||||    
T  3926204 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaacaaa---ttaaacaaattttttttatttttt-tataaatgtt 3926109  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||||||||   |||||| ||||||||                  |||||| |||| ||||||| |  ||||||| |||| ||||||||||||||||    
T  3926108 atccatggatatacgtataaacccgcggat------------------tacccgctaaatggatatctgcacggatatggatatggtacggatttcatat 3926027  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||||||||| | |||||||||||||| |||||||    
T  3926026 ttatctaacggagcggacacaaatatcacactatccacatccat 3925983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 624 - 792
Target Start/End: Original strand, 42879066 - 42879234
Alignment:
Q  624 ttaaacaaattttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggata 723  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| |||| | |||||| | ||| ||||||||| |||  | ||||||||| ||||||||||    
T  42879066 ttaaacaaattttttctttcatttttataaatgttatccatgaatatatgtataaacctgcgaatacctcaacatctacggattacccgctaaacggata 42879165  T
Q  724 tccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactat 792  Q
    ||||   |||||| ||||  ||||  ||||||||||||||  ||||||  |||||| |||| |||||||    
T  42879166 tccgccgggatatggatattgtacatatttcatatttatccaacggagtagacataaatattacactat 42879234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 39800163 - 39800253
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  39800163 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtat 39800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 650 - 724
Target Start/End: Complemental strand, 2209463 - 2209389
Alignment:
Q  650 ataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatat 724  Q
    ||||||||||||||||||||||| |||||| ||||  ||||||||||||||   ||||||||| |||||||||||    
T  2209463 ataaatgttatccatggatatctgtataaacccgcatatacctcaaaatccatggattacccgctaaacggatat 2209389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 3926606 - 3926506
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    ||||||| |||||||| ||||| ||| ||||||||||  ||||||||||||||  ||| |||||||||     |||||||||||||||||| ||||||||    
T  3926606 agcggatatcttaatggatatctatggataaaataaacggattttttaactacatgcttattaatggatgtggatgcggatttaatggtatccacacccg 3926507  T
Q  273 c 273  Q
    |    
T  3926506 c 3926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 42837920 - 42837821
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    ||||||| |||||||| ||||| ||| ||||||||||  ||||||||||||| ||| ||| ||||||||||  |||| |||||||| |||| ||||||||    
T  42837920 agcggatatcttaatggatatctatggataaaataaacggattttttaactatccgttaaataatggacac-tatgcagatttaatagtatccacacccg 42837822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 2209737 - 2209658
Alignment:
Q  363 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 441  Q
    |||||| |||||||  ||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  2209737 acgctcctttaaaatgaagggaaagtggtcgggattgttgaagcaagaagctttgtttttgttgaatatgataagcttta 2209658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 2209544 - 2209499
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaatt 604  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||    
T  2209544 ctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaatt 2209499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 39887075 - 39886978
Alignment:
Q  176 ggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    |||| |||||||| |||| |||| ||||||||||   || ||| ||||||| ||||||||||||| ||| |||| ||||| |||||||  ||||||||    
T  39887075 ggatatcttaatggatatacatggataaaataaacgaatatttcaactacctgctaattaatggatacagatgcagatttcatggtatctacacccgc 39886978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 4e-74; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 173 - 443
Target Start/End: Complemental strand, 5110620 - 5110334
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  5110620 agcggataccttaatggatatccatggataaaataaatgaattttttaactacccgctaattaatggatacgaatgcggatttaatggtatccacacccg 5110521  T
Q  273 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
    |                ||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||  ||  |||||||||||||||||    
T  5110520 cagatatccatacccgctattaaaccaaataaattacataaataacctcaatatcattcaactttctaagaaaacacgataggtattgtgagtgttatca 5110421  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  5110420 attattacgctcctttaaaagaaagtgaaagtggttgggattgttgaagcaaaagctttgtttttgttgaatatgatgagttttact 5110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 559 - 799
Target Start/End: Complemental strand, 5110218 - 5109982
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  5110218 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaaaa----ttaaacaaattttttattttatttttataaatgtt 5110123  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| || |||||||||||||||||||||||||  ||||||||| ||||||||||||||   | |||| |||||  ||||||||||||||    
T  5110122 atccatggatatctgtaaaaatccgcggatacctcaaaatccgtggattacccgctaaacggatatccgcatgaatatggatagaatacggatttcatat 5110023  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    ||||||||| ||||| ||| | |||||||||||||||||||    
T  5110022 ttatctgacagagcgcacacaaatatcacactatccgcatc 5109982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 559 - 777
Target Start/End: Complemental strand, 5704613 - 5704400
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  5704613 ctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaaa-----ttaaacaaattttttattttatttttataaatgtt 5704519  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||| |||||||||||||||||||    ||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||    
T  5704518 atccatggatatctgtataaacccgcggatacctcaaaatcattggattacccgctaaacggatatccgcgcggatatagatagagtacagatttcatat 5704419  T
Q  759 ttatctgacggagcggaca 777  Q
    |||||| | ||||||||||    
T  5704418 ttatctaatggagcggaca 5704400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 13626031 - 13626317
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||||||||  |||||||    
T  13626031 agcggataccttaatggatatctatggataaaataaacagattttttaactacccgctaattaatggatacggatgcggatttaatggtatctacacccg 13626130  T
Q  273 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
    |                ||||||||||  ||| ||||||||||||||||||||||||||||| |  |||||||||||| ||  |||| ||||||||||||    
T  13626131 cgaatatccataccctctattaaaccggataagttacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattatgagtgttatca 13626230  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||| |||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||| || |||||||    
T  13626231 attattacgctcctttaaaaggaagtgaaagtggttgggaatgttgaagcaagagctttgtttttgtcgaatatgatgaactttact 13626317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 182 - 443
Target Start/End: Complemental strand, 5705000 - 5704729
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 273  Q
    ||||||| |||||| || ||||||||||| ||||||||||||| ||||||||||||||| ||  ||| |||||||||||||| |||||||||            
T  5705000 cttaatgtatatccgtggataaaataaatggattttttaactatccgctaattaatggatacggatgtggatttaatggtatccacacccgcaaatattc 5704901  T
Q  274 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 365  Q
            ||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||  ||||||||||||||| | |||| |||    
T  5704900 atatctgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttattagttattacg 5704801  T
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
     ||||||||||  ||||||||||||||||||| |||||      ||||||||||||||||||||||| ||||||||||    
T  5704800 ttcttttaaaaagaagtgaaaatggttgggatcgttga------agctttgtttttgttgaatatgatgagctttact 5704729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 13807846 - 13807671
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||||||| |  |||||||||||||||  ||||||||||||||||| |||| |||||    
T  13807846 acccgctattaaaccaagtaaattatataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacgct 13807747  T
Q  368 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    | |||||||  |||||||| ||||| ||||||||||||||| |||||||||| |||||||||||| || |||||||    
T  13807746 cctttaaaatgaagtgaaagtggtttggattgttgaagcaaaagctttgtttatgttgaatatgatgaactttact 13807671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 566 - 799
Target Start/End: Original strand, 13626421 - 13626650
Alignment:
Q  566 gaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgttatccatg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||| |             | |||||||||||||||||||||| |||||||||||||||||    
T  13626421 gaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaaaa----taaaacaaattttttattttatttttataaatgttatccatg 13626516  T
Q  666 gatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctg 765  Q
     |||||| |||||| ||||||||| ||||||||  || ||||||||  |||  |||||||||  ||||||| |||||||||||||||||||||||||||     
T  13626517 aatatctgtataaacccgcggatatctcaaaatatgcggattaccctctaagaggatatccgcccggatatggatagggtacggatttcatatttatcta 13626616  T
Q  766 acggagcggacatatatatcacactatccgcatc 799  Q
    ||| | ||||||   |||||||||||||||||||    
T  13626617 acgaaacggacacgaatatcacactatccgcatc 13626650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 176 - 443
Target Start/End: Original strand, 31575662 - 31575945
Alignment:
Q  176 ggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc----- 270  Q
    |||| |||||||| |||| |||| ||||||||||   ||||| |||||||||||||||||||||| ||  ||||||||||||| |||| ||||||         
T  31575662 ggatatcttaatggatatgcatggataaaataaacgaattttgtaactacccgctaattaatggatacggatgcggatttaattgtatccacaccagcgg 31575761  T
Q  271 -----------cgctattaaaccgattaaattacataaataacctcaatatcattcaacatta-taagaaaacaccctaaatattgtgagtgttatcaat 358  Q
               |||||||||||| | ||||||||||||||||||||||||||||||||| ||  ||||||||||| |||  ||||||||||||||||| |    
T  31575762 atatccatatccgctattaaaccaagtaaattacataaataacctcaatatcattcaacttttctaagaaaacactctaggtattgtgagtgttatcagt 31575861  T
Q  359 tatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||| ||||||||| ||||| |||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||| || |||||||    
T  31575862 tattacgctcttt-aaaaggaagtgaaagtggttgggattgttgaatcaaaagcttggtttatgttgaatatgatgaactttact 31575945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 190 - 443
Target Start/End: Original strand, 45150974 - 45151242
Alignment:
Q  190 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacac----------------ccgc 273  Q
    ||||||||| ||||||||||  ||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||                ||||    
T  45150974 atatccatggataaaataaacggattttttaactatccgctaattaatggatacagatgcggatttaatggtatccacacccacagatatccatatccgc 45151073  T
Q  274 tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttta 373  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |  | |||||||| | |   ||||||||||||||||  |||| |||||| ||||    
T  45151074 tattaaaccgagtaaattacataaataacctcaatatcattcaacttccttagaaaaca-cttcggtattgtgagtgttatcggttattacgctccttta 45151172  T
Q  374 aaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
     |||||||||||| ||||||||||||||||||||| | ||| |||| || | ||||||| ||||||||||    
T  45151173 taagaaagtgaaagtggttgggattgttgaagcaaaaacttggtttatgctaaatatgatgagctttact 45151242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 559 - 762
Target Start/End: Original strand, 31576061 - 31576263
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |             | |||||||||||||||||||||| ||||||||||    
T  31576061 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaataaaaataaat-aaacaaattttttattttatttttataaatgtt 31576159  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| || ||| || ||||||||| ||||| ||| ||||||||| |||| ||||||||   ||||||| ||||||||||  |||||||||    
T  31576160 atccatggatatctgtacaaacccacggatacctaaaaattcgcggattacccgctaaatggatatccacacggatatggatagggtacaaatttcatat 31576259  T
Q  759 ttat 762  Q
    ||||    
T  31576260 ttat 31576263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 639 - 802
Target Start/End: Complemental strand, 5938670 - 5938507
Alignment:
Q  639 attttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatag 738  Q
    ||||| |||||||||||||||||||||||||| | |||||| |||| ||||| |||||||| |  ||||||||| |||||||||||||  |||||||| |    
T  5938670 attttttttatataaatgttatccatggatatttgtataaacccgcagatacttcaaaatctgtggattacccgctaaacggatatccacgcggatatgg 5938571  T
Q  739 atagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||| ||||||||||||||| |||||| |||||   |||||||||||| | |||||||    
T  5938570 atagggtacgaatttcatatttatctaacggagtggacacggatatcacactattcacatccat 5938507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 653 - 802
Target Start/End: Original strand, 42625222 - 42625370
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||   ||||| ||| |||| | |||||||   |||||| |||||||||||||||    
T  42625222 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatgaatatccgcatggatatggatagggtacggatt 42625321  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| || ||| |||||   |||||||||| |||||||||||    
T  42625322 tcatatttatctaac-gagtggacacggatatcacactctccgcatccat 42625370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 5939080 - 5938989
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    ||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  5939080 cttaatggatattcatggatataataaatggattttttaactacccgctaattaatggatacaaatgcggatttaatggtatctacacccgc 5938989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 42622396 - 42622514
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaac 281  Q
    ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||| | ||  |||||||||||||||||| | |||||||||||||||    
T  42622396 cttaatggatatccacggataaaataaatggatattttaactacccgttaattaatgaatacggatgcggatttaatggtatccgcacccgctattaaac 42622495  T
Q  282 cgattaaattacataaata 300  Q
     || | |||||| ||||||    
T  42622496 tgagtgaattacgtaaata 42622514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 699 - 802
Target Start/End: Complemental strand, 13807447 - 13807344
Alignment:
Q  699 ccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcat 798  Q
    |||| ||||||||| |||| |||||||||  ||||||| |||||| |||||||||||||||| ||| |||  ||||||| | |||||||||||||||| |    
T  13807447 ccgcggattacccgctaaatggatatccgcacggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgt 13807348  T
Q  799 ccat 802  Q
    ||||    
T  13807347 ccat 13807344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 13807555 - 13807506
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13807555 ctaaacagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 13807506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 607
Target Start/End: Complemental strand, 5938738 - 5938690
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaatttta 607  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5938738 ctaaaaagaaaagaaaatgcatgtgaagaaccattgtttctaaatttta 5938690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 704 - 795
Target Start/End: Complemental strand, 31604702 - 31604611
Alignment:
Q  704 gattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccg 795  Q
    ||||||||||||||| ||||||||  | |||||||||| |||||  ||||||||||||||  ||||||| |||| | |||||||||||||||    
T  31604702 gattacccgttaaacagatatccgcacagatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacactatccg 31604611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 45151358 - 45151407
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45151358 ctaaaaagaaaaaaaaatgcatgtgaagaacctttgtctctaaattttag 45151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 5938908 - 5938854
Alignment:
Q  389 ggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| || |||||||    
T  5938908 ggttgagattgttgaagcaagaactttgtttttgttgaatatgatgaactttact 5938854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 5938978 - 5938912
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacacc 334  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||| |   |||||||||||    
T  5938978 acccgctattaaaccgagtatattacataaattacctcaatatcattcaacttccgaagaaaacacc 5938912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 13807918 - 13807857
Alignment:
Q  212 gattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    ||||||||||||||||||| ||||||||| ||  ||| |||||||||||||| |||||||||    
T  13807918 gattttttaactacccgcttattaatggatacggatgtggatttaatggtatccacacccgc 13807857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 724
Target Start/End: Original strand, 45458578 - 45458662
Alignment:
Q  640 ttttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatat 724  Q
    |||| ||| |||||||||||||||||||||||| |||||||  | |||||| |||||||| |  ||||||||| |||| ||||||    
T  45458578 ttttttttttataaatgttatccatggatatctgtataaatttgtggatacttcaaaatctgtggattacccgctaaatggatat 45458662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 798
Target Start/End: Original strand, 45151515 - 45151574
Alignment:
Q  739 atagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcat 798  Q
    ||||| ||| |||||||||||||||| || |||||||||   ||||||||||||||||||    
T  45151515 ataggatacagatttcatatttatctaacagagcggacacggatatcacactatccgcat 45151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 764
Target Start/End: Original strand, 38724559 - 38724672
Alignment:
Q  651 taaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacgga 750  Q
    ||||||||||||||| |||||| |||||||| ||   ||| | |||||  | |||||| ||||||||||||||| || | ||||||  |||  |||  ||    
T  38724559 taaatgttatccatgaatatctgtataaatctgcatgtacattaaaatttgtagattatccgttaaacggatatgcgcgtggatatgaataaagtagaga 38724658  T
Q  751 tttcatatttatct 764  Q
    ||||||||||||||    
T  38724659 tttcatatttatct 38724672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 688
Target Start/End: Original strand, 45151418 - 45151480
Alignment:
Q  624 ttaaacaaattttttattttatttatataaatgttatccatggatatctatataaatccgcggat 688  Q
    |||||||| ||||||  || |||| |||||||||||||||| ||||||| |||||| ||||||||    
T  45151418 ttaaacaattttttt--ttaatttttataaatgttatccatagatatctgtataaacccgcggat 45151480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 4e-68; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 13825918 - 13825680
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||| |             |||||||||||||||| ||||||| ||||||||||    
T  13825918 ctaaaaataaaagaaaatgcatatcaagaacctttgtttctaaattttagctaaaaaaaa-----ttaaacaaattttttaatttatttttataaatgtt 13825824  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||| | || |||| |||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||    
T  13825823 atccatggatatctgtataaacctgcagatatctcaaaatccgcagattacccgctaaatggatatccgcgcggatatggatagggtacggatttcatat 13825724  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  13825723 ttatctaacggagcggacacatatatcacactatccgcatccat 13825680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 560 - 802
Target Start/End: Original strand, 25874825 - 25875063
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtta 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||| |||||| ||||    
T  25874825 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaatac----ttaaacaaattttttattttatttttataaacgtta 25874920  T
Q  660 tccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatt 759  Q
    ||||||||||||| |||||| || ||||||||||||||||||| ||||||||| |||||||||||  | |||||||| ||||||||||||||||||| ||    
T  25874921 tccatggatatctgtataaacccacggatacctcaaaatccgcggattacccgctaaacggatatttgcgcggatatggatagggtacggatttcatctt 25875020  T
Q  760 tatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||| ||||||||||||   |||||||||||||| |||||||    
T  25875021 tatctaacggagcggacacggatatcacactatccacatccat 25875063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 25874420 - 25874707
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaata--aaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc 270  Q
    |||||||  ||||||| ||||||||| |||  |||||||  ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  25874420 agcggataccttaatggatatccatggatataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacc 25874519  T
Q  271 cgc----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 354  Q
    |||                ||||||||||| || |||||||||||||||||||||||||||||| |   |||||||||||||| ||||||||||||||||    
T  25874520 cgcggatatccatacccgttattaaaccgaatatattacataaataacctcaatatcattcaacttccgaagaaaacaccctagatattgtgagtgttat 25874619  T
Q  355 caattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    || |||| |||||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||||| |||||||||| ||| ||||||    
T  25874620 cagttattacgctcctttaaaaggaagtgaaagtggttgggaatgttaaagcaagagctttgttttt-ttgaatatgatgagttttact 25874707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 27926741 - 27926979
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  27926741 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaacaaa-----ttaaacaaattttttattttatttttataaatgtt 27926835  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||| ||||||| ||||||  ||||| || |||||||||     ||||||||||||||||||| |||||  ||||||||||| ||||  |||||||||    
T  27926836 atccatcgatatctgtataaactcgcgggtagctcaaaatctatgcattacccgttaaacggataaccgtgtcgatatagatagagtacatatttcatat 27926935  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||||||||   |||| ||||||||  |||||||    
T  27926936 ttatctaacggagcggacacggatatgacactatctacatccat 27926979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 173 - 430
Target Start/End: Original strand, 27926352 - 27926623
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc-- 270  Q
    |||||||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||       
T  27926352 agcggataccttaatggatatccatggataaaataaatagattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacatg 27926451  T
Q  271 --------------cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
                  |||||||||||||| |||||||  ||||||||||||||| |||||||| |  ||||||||   ||||  ||||||||||||||| |    
T  27926452 cggatatctatatgcgctattaaaccgaataaattatgtaaataacctcaataccattcaacttcctaagaaaaa--cctaggtattgtgagtgttatta 27926549  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatat 430  Q
     |||| ||  || |||||||  ||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  27926550 gttattacattcctttaaaatgaagtgaaagaggttgggattgttgaagtaagagctttgtttttgttgaatat 27926623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 173 - 441
Target Start/End: Complemental strand, 5295625 - 5295336
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc-- 270  Q
    |||||||  ||||||| ||||||||||||||||||||   ||||||||||||||| |||||||||||| ||| |||| |||||||||||||  |||||      
T  5295625 agcggataccttaatggatatccatgaataaaataaacgtattttttaactacccactaattaatggatacagatgcagatttaatggtatctacacctg 5295526  T
Q  271 --------------cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataaga----aaacaccctaaatattgtgagtgtt 352  Q
                  ||||||||||| || |||||||||||||||| |||||||||||| ||| |  |||||    |||||||| | ||||| ||||||||    
T  5295525 cggatatccatatccgctattaaactgagtaaattacataaataatctcaatatcattaaacttcctaagaaaacaaacaccccagatattatgagtgtt 5295426  T
Q  353 atcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgtt-gaagcaagagctttgtttttgttgaatatgacgagcttta 441  Q
    |||  |||| |||||| |||||||| | |||||| |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||    
T  5295425 atcggttattacgctcctttaaaaggatgtgaaagtggttgagattgttggaagcaagtgctttgtttttgttgaatatgatgagcttta 5295336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 5295218 - 5294992
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||| |             |||||||||||||||||||||||| ||||| | ||    
T  5295218 ctaaaaagaaaagaaaatgtatgtgaagaacttttgtttctaaattttagctaaaaaaaa-----ttaaacaaattttttattttatttttataa-tatt 5295125  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    || |||||||||||||||||| ||| |||||||||||||| ||||||||| |  |||||||||||||| || |||||||           ||||||||||    
T  5295124 attcatggatatctatataaacccgtggatacctcaaaattcgcagattatctattaaacggatatccatgaggatata-----------gatttcatat 5295036  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||| |||||   ||||||||||||||||||||||    
T  5295035 ttatctaacggaggggacacggatatcacactatccgcatccat 5294992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 173 - 432
Target Start/End: Complemental strand, 21288503 - 21288233
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgatttttt-aactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc 271  Q
    ||||||| |||||||| ||||| ||| ||||||||||  |||||||| ||||||||||||||||||||| |   |||||||||||||||||| |||||||    
T  21288503 agcggatatcttaatggatatctatggataaaataaacggatttttttaactacccgctaattaatggatagggatgcggatttaatggtatccacaccc 21288404  T
Q  272 gc----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatc 355  Q
    ||                ||||||||| | ||||||||||||||||| ||||||||||||||| |  | |||||||||||||  ||||||||||||||||    
T  21288403 gcggatatccatacccgctattaaaccaagtaaattacataaataacttcaatatcattcaacttcctgagaaaacaccctaggtattgtgagtgttatc 21288304  T
Q  356 aattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    | |||| ||| || ||| |||| || ||||| ||||||| ||||||||      |||||||||||||||||||||||    
T  21288303 agttattacgatccttttaaaggaaatgaaagtggttggaattgttga------agctttgtttttgttgaatatga 21288233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 653 - 802
Target Start/End: Complemental strand, 12148953 - 12148804
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  ||||||| || ||||||||||||||||   ||||| ||| |||| |||||||||   |||||| |||||||||||||||    
T  12148953 aatgttatccatggatatccgtataaattcgtggatacctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtacggatt 12148854  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| |||||| |||||   ||||||||||||||||||||||    
T  12148853 tcatatttatctaacggagtggacacggatatcacactatccgcatccat 12148804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 21288107 - 21287887
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  21288107 ctaaagagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaaaa-----ttaaacaaattttttattttatttttataaatgtt 21288013  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||| ||||||||           ||||        | |||||||||||| |  || |||| |||||||||||||||||||||    
T  21288012 atccatggatatctgtataaacccgcggat-----------cgca-------tgctaaacggatatctgcacgaatatggatagggtacggatttcatat 21287931  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||| ||||| | ||||||||||||| ||||||||    
T  21287930 ttatctaacggaggggacacagatatcacactatctgcatccat 21287887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 3778696 - 3778884
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||| || |||||    
T  3778696 agcggataccttaatggatatccatgaataaaataaacagattttttaactatccgctaattaatggatacagatgcggatttaacggtatccatacccg 3778795  T
Q  273 ---------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtg 346  Q
                   ||||||||| || ||||||||||||||||||| ||||||||||||| |  |||||||| ||||||| |||||||    
T  3778796 cggatattcataccactattaaacagagtaaattacataaataaccttaatatcattcaacttcctaagaaaaaaccctaagtattgtg 3778884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 13826352 - 13826266
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 354  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||| |  |||||||||||||||  |||||||||||||||    
T  13826352 acccgctattaaaccgagtaaattacattaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttat 13826266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 632 - 794
Target Start/End: Original strand, 48251834 - 48251995
Alignment:
Q  632 attttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcg 731  Q
    |||||||||||| ||| |||||||||||| ||||||||| | |||||| | |  ||||||||||||| ||  ||||||| | |||||||||||||  | |    
T  48251834 attttttatttttttt-tataaatgttattcatggatatatgtataaaccagtagatacctcaaaattcgtggattacctgctaaacggatatccacgtg 48251932  T
Q  732 gatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatcc 794  Q
    ||||| ||||||||||| ||||||||||||||  ||||| |||| ||  ||||||||||||||    
T  48251933 gatatcgatagggtacgaatttcatatttatccaacggaacggatatggatatcacactatcc 48251995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 643 - 802
Target Start/End: Complemental strand, 4127932 - 4127772
Alignment:
Q  643 tatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaa-cggatatccgtgcggatatagata 741  Q
    ||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||| |  ||||||||  ||||   |||||  | | | |||| ||||    
T  4127932 tatttttataaatgttatccatggatatatgtataaacccgcggatacctcaaaatctgtggattaccccctaaatttgatatatgcgtgaatatggata 4127833  T
Q  742 gggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||| |||||||||||||||||  ||||| ||||||   ||||||||||||||||||||||    
T  4127832 gggttcggatttcatatttatccaacggaacggacacggatatcacactatccgcatccat 4127772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 12149396 - 12149296
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||||| ||  |||| ||||||||||||| | ||||||    
T  12149396 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgttaattaatggatacggatgctgatttaatggtatccgcacccg 12149297  T
Q  273 c 273  Q
    |    
T  12149296 c 12149296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 13826085 - 13826034
Alignment:
Q  392 tgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||    
T  13826085 tgggaatgttgaagcaagagctttgtttttgttgaatatgatgaactttact 13826034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 13826446 - 13826396
Alignment:
Q  190 atatccatgaataaaataaattgattttttaactacccgctaattaatgga 240  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  13826446 atatccatggataaaataaacggattttttaactactcgctaattaatgga 13826396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 802
Target Start/End: Complemental strand, 36584321 - 36584168
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||| ||||| ||| ||||| | ||||||  |||  |||||||||||| ||  ||||| |||||||| ||||||||| ||||||||  |||| | | |    
T  36584321 tataaaagttattcatagatatttgtataaactcgcaaatacctcaaaattcgtggattatccgttaaatggatatccgcgcggatatgaatagagcatg 36584222  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||||||  | ||||| || | | |||||| |||||| ||||||||    
T  36584221 aatttcatatttatccaatggagcagatacagatatcatactatctgcatccat 36584168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 36584577 - 36584501
Alignment:
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaa-gagctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||||||  ||||||| |||| |||||| |||||||||  | ||||||||||||||||||||| || |||||    
T  36584577 ctcttttaaaaggtagtgaaagtggtcgggattcttgaagcaataaactttgtttttgttgaatatgatgaacttta 36584501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 48251216 - 48251296
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    |||||| ||||| ||| ||||||||||| ||| |||||| || | |||||||||||||  || || |||||||||||||||    
T  48251216 ttaatggatatctatggataaaataaatggatattttaattaactgctaattaatggatgcagatacggatttaatggtat 48251296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 635 - 697
Target Start/End: Complemental strand, 26187866 - 26187804
Alignment:
Q  635 ttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaa 697  Q
    |||| ||||| || ||||||| ||||||||| |||||| ||||||  ||||||||||||||||    
T  26187866 tttttttttagttttataaatattatccatgaatatctgtataaactcgcggatacctcaaaa 26187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 2e-67; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 560 - 802
Target Start/End: Complemental strand, 19841751 - 19841514
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtta 659  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |             ||||| || ||||||||||||||| |||||||||||    
T  19841751 taaaaagaaaagaaaacgcatgtgaagaacctttgtttttaaattttagttcaaaaaaa-----ttaaataatttttttattttatttttataaatgtta 19841657  T
Q  660 tccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatt 759  Q
    |||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  19841656 tccatgaatatctgtataaatccgcggatacctcaaaatcagcagattacccgctaaacggatatccgcacagatatcgatagggtacggatttcatatt 19841557  T
Q  760 tatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||    
T  19841556 tatccgacagagcggacatagatatcacactatccgcatccat 19841514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 183 - 443
Target Start/End: Complemental strand, 38952024 - 38951748
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc--------- 273  Q
    |||||| |||| || | ||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||             
T  38952024 ttaatggatattcacggataaaataaacagattttttaactacccgctaattaatggatacagatgcggatttaatggtattcacacccgcatttatcca 38951925  T
Q  274 -------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgc 366  Q
           |||||||||||  |||||||||||||||||||||||||||||||| |  | |||||||||| ||  ||||||||||||||||| |||| ||||    
T  38951924 tatccgctattaaaccgaggaaattacataaataacctcaatatcattcaacttcctgagaaaacaccttaggtattgtgagtgttatcagttattacgc 38951825  T
Q  367 tcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    || |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38951824 tcctttaaaatgaagtgaaagtggttgggattgttgaagcaagagctttgtttttgttgaatatgatgagctttact 38951748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 560 - 802
Target Start/End: Complemental strand, 38951631 - 38951393
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtta 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||  |||||||||||    
T  38951631 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaaaaaagaa----ttaaacaaattttttattttattattataaatgtta 38951536  T
Q  660 tccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatt 759  Q
    |||| ||||||||||||||| |||||  ||||||||||| ||||||||| |||||||||||||||||| |||||||| ||||| ||| | |||| |||||    
T  38951535 tccacggatatctatataaacccgcgattacctcaaaattcgcagattatccgttaaacggatatccgcgcggatatggatagagtatgaattttatatt 38951436  T
Q  760 tatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||| ||||| ||||||   |||||||||| |||||||||||    
T  38951435 tatctaacggaacggacacgaatatcacactctccgcatccat 38951393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 41039345 - 41039105
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||| |             | |||||||  ||||||||||||| ||||||||||    
T  41039345 ctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaattttagctaaaaaaaaaa---tcaaacaaaaattttattttatttttataaatgtt 41039249  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||||| |||||||||| ||||||||| ||||||||| |||| |||||||||  ||||||| |||| ||||||||||||||||    
T  41039248 atccatggatatctgtataaatctgcggatacctaaaaatccgcggattacccgctaaatggatatccgcacggatatggatatggtacggatttcatat 41039149  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||||||||||   |||||||| |||||||||||||    
T  41039148 ttatctaacggagcggacacggatatcacattatccgcatccat 41039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 182 - 443
Target Start/End: Complemental strand, 19842133 - 19841856
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 273  Q
    ||||||| ||||||||| ||||||||||  |||||||||||||  |||||||||||||| | | |||||||||||||||| | |||||||||            
T  19842133 cttaatggatatccatggataaaataaacggattttttaactaatcgctaattaatggataaagatgcggatttaatggtttccacacccgcgaatatca 19842034  T
Q  274 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 365  Q
            ||||||||||| ||||||||||||||||||| ||||||||||||  || |||||||| ||||||  ||||||||||||||| | |||| |||    
T  19842033 atacctgctattaaaccgagtaaattacataaataaccttaatatcattcaattttctaagaaaaaaccctaggtattgtgagtgttattagttattacg 19841934  T
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||| |||||||| ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||| || |||||||    
T  19841933 ctcatttaaaaggaagtgaaaatggttgggattgttgatgcaatagctttatttttcttgaatatgatgaactttact 19841856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 561 - 777
Target Start/End: Complemental strand, 22278322 - 22278107
Alignment:
Q  561 aaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgttat 660  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||||    
T  22278322 aaaaagaaaagaaaatgcatgttaagaacatttgtttctaaattttagctaaaaaaat-----ttaaacaaattttttattttatttttataaatgttat 22278228  T
Q  661 ccatggatat-----ctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttca 755  Q
    ||||||||||     || |||||| ||||  |||||||||||||||  ||| ||||| ||||||||||||||    ||||| ||||||||||||||||||    
T  22278227 ccatggatatgatatctgtataaacccgcaaatacctcaaaatccgtggat-acccgataaacggatatccgcatagatattgatagggtacggatttca 22278129  T
Q  756 tatttatctgacggagcggaca 777  Q
    ||||||||  ||||| ||||||    
T  22278128 tatttatccaacggaacggaca 22278107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 650 - 802
Target Start/End: Complemental strand, 23626779 - 23626627
Alignment:
Q  650 ataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacgg 749  Q
    ||||||||||||||||||||| | ||||||  |||||||||||||||||| |  ||||||| | ||||||||||||||   ||||||  |||| |||||     
T  23626779 ataaatgttatccatggatatatgtataaactcgcggatacctcaaaatctgtggattacctgctaaacggatatccgcatggatatgaatagtgtacga 23626680  T
Q  750 atttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||||| ||||||||||||| | ||||||||||||  ||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccat 23626627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 40568655 - 40568782
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||    
T  40568655 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtattcgcacccg 40568754  T
Q  273 ctattaaaccgattaaattacataaata 300  Q
    ||||||||| || | |||||| ||||||    
T  40568755 ctattaaactgagtgaattacgtaaata 40568782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 649 - 802
Target Start/End: Complemental strand, 51357106 - 51356954
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||||||||||||||||||| |||||| | |||| ||| ||||||| ||  ||||||||| ||||  |||||||||| |||||| ||||||| ||     
T  51357106 tataaatgttatccatggatatctgtataaacctgcgggtac-tcaaaattcgtggattacccgctaaattgatatccgtgtggatatggatagggcaca 51357008  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||| ||  |||||||||||| | ||||||||||||||||||||||    
T  51357007 aatttcatatttgtccaacggagcggacacagatatcacactatccgcatccat 51356954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 8819505 - 8819657
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||| ||||| ||  ||||||||| |||| ||||||||| |||||||| ||||||| |||    
T  8819505 tataaatgttatcta-ggatatctgtataaatccacggataccttaaaattcgtggattacccgctaaatggatatccgcgcggatatggatagggaacg 8819603  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||| ||  |||||| ||||    ||||||||||||||||||||||    
T  8819604 aatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccat 8819657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 41039564 - 41039471
Alignment:
Q  339 atattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    |||||||||||||||||| |||| |||||| |||||||| || ||||| ||||||| ||||||||||||| ||||||| || ||||||||||||    
T  41039564 atattgtgagtgttatcagttattacgctcctttaaaaggaaatgaaagtggttggaattgttgaagcaaaagctttgcttatgttgaatatga 41039471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 22278560 - 22278460
Alignment:
Q  323 taagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttg 422  Q
    |||||||| || |||  ||||||||||||||| | |||| ||||||||||||||| |||||||| |||||| |||| |||| ||||||||||||||||||    
T  22278560 taagaaaaaactctaggtattgtgagtgttattagttattacgctcttttaaaaggaagtgaaagtggttgagatttttgatgcaagagctttgtttttg 22278461  T
Q  423 t 423  Q
    |    
T  22278460 t 22278460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 41041850 - 41041750
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||  ||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||| |||||||| ||| ||||||||    
T  41041850 agcggataccttaatggatatttatggataaaataaatggattttttaactacccgctaattaatagatacagatgcgaatttaatgatatccacacccg 41041751  T
Q  273 c 273  Q
    |    
T  41041750 c 41041750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 653 - 802
Target Start/End: Original strand, 40572101 - 40572248
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||| ||||||  ||||||||||  |||||||||||||||   ||||| ||| |||| |||||||||   |||||| |||||||||   |||    
T  40572101 aatgttatccatagatatccgtataaatccgtagatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggta--aatt 40572198  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||| |||||||| |||||| |||||   |||||||||||||| |||||||    
T  40572199 tcacatttatctaacggagtggacacgaatatcacactatccacatccat 40572248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 628 - 760
Target Start/End: Original strand, 17120465 - 17120597
Alignment:
Q  628 acaaattttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccg 727  Q
    ||||||||||||||||  || |||||||||||| ||| ||||||||||||||  |||||||| ||||||||  |  ||||||||| ||||||||||| |     
T  17120465 acaaattttttatttttattttataaatgttattcatagatatctatataaactcgcggatagctcaaaatttgtggattacccgctaaacggatattct 17120564  T
Q  728 tgcggatatagatagggtacggatttcatattt 760  Q
     | ||||||  ||| |||||  |||||||||||    
T  17120565 cgtggatatgaatatggtacaaatttcatattt 17120597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 22279397 - 22279315
Alignment:
Q  190 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| ||| |||| |||||||| |||| |||||||||    
T  22279397 atatccatggataaaataaatggattttt-aactacccgttaattaatggatacagatgcagatttaatagtatccacacccgc 22279315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 43624647 - 43624597
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 318  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  43624647 acccgctattaaaccgagtaaattacataaataaccttaatatcattcaac 43624597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 23627037 - 23626968
Alignment:
Q  373 aaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagcttta 441  Q
    |||||||||||||| | |||||||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  23627037 aaaagaaagtgaaagtagttgggattgttgaagcaagaagttttgtttttgttaaatatgatgagcttta 23626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 29117409 - 29117328
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    |||||| ||||| |||| ||||||||||  ||| ||||||||||||||||||||||||| ||  |||||||||||| |||||    
T  29117409 cttaataaatattcatggataaaataaacggatattttaactacccgctaattaatggatacggatgcggatttaacggtat 29117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 51357369 - 51357297
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||| ||||||| |||| |||||||||||| ||| | |||||||||||||||||||||| ||||||||    
T  51357369 tttaaaagatagtgaaagtggtcgggattgttgaaacaataagctttgtttttgttgaatatgatgagcttta 51357297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 40714653 - 40714736
Alignment:
Q  271 cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 354  Q
    |||||||||||||| ||||||||||||||||| | |||| | |||||| || |||| ||| | ||||| |||||||||||||||    
T  40714653 cgctattaaaccgagtaaattacataaataactttaatacctttcaactttttaagcaaaaaacctaagtattgtgagtgttat 40714736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 560 - 724
Target Start/End: Original strand, 17120403 - 17120561
Alignment:
Q  560 taaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtta 659  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||| || |             ||  ||||||||||||||||  || |||||||||||    
T  17120403 taaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaatttcagtt----taaaaaaaatt--acaaattttttatttttattttataaatgtta 17120496  T
Q  660 tccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatat 724  Q
    | ||| ||||||||||||||  |||||||| ||||||||  |  ||||||||| |||||||||||    
T  17120497 ttcatagatatctatataaactcgcggatagctcaaaatttgtggattacccgctaaacggatat 17120561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 29117032 - 29116983
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  29117032 ctaagaagaaaataaaatgcatgtgatgaacctttgtttctaaattttag 29116983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 36464519 - 36464619
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||| | ||||||||| ||||||||||  ||| ||||||||| |||||||||||| || ||  |||||||||||||| ||| | ||||||    
T  36464519 agcggataccttaacggatatccatggataaaataaacggatattttaactatccgctaattaatagatacggatgcggatttaatgatatccgcacccg 36464618  T
Q  273 c 273  Q
    |    
T  36464619 c 36464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 802
Target Start/End: Complemental strand, 42555257 - 42555103
Alignment:
Q  639 attttatttatataaatgttatccatggatatctatataaatcc-gcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatata 737  Q
    ||||||||| ||| ||||||||||||| |||||| |||||| || ||||||| |||||||||   |||||||| || |||||         || |||||     
T  42555257 attttatttttattaatgttatccatgaatatctgtataaaccccgcggatatctcaaaatctatagattacctgtaaaacgc--------gcagatatg 42555166  T
Q  738 gatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||| ||||  ||||||||||||||  ||||||||||  |||| ||||||||||||||||||||    
T  42555165 gatagagtacaaatttcatatttatcaaacggagcgga--tatacatcacactatccgcatccat 42555103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 43624424 - 43624373
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacc--tttgtttctaaattttag 608  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  43624424 ctaaaaagaaaagaaaatgcatgtgaagaatctttttgtttctaaattttag 43624373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 17120231 - 17120309
Alignment:
Q  363 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagag-ctttgtttttgttgaatatgacgagcttta 441  Q
    |||||| |||||||| |||||||| |||| |||||||||||  |||||  ||||||||||||||||||||| ||||||||    
T  17120231 acgctcctttaaaaggaagtgaaagtggtcgggattgttgac-caagaaactttgtttttgttgaatatgatgagcttta 17120309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 649 - 800
Target Start/End: Original strand, 36465017 - 36465167
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||||||| ||||| ||||| |||||| |||| | ||  | |||||||   ||||||||| |||| ||||| || ||||||||| |||||   |      
T  36465017 tataaatgttattcatgggtatctgtataaacccgcaggtattt-aaaatccatggattacccgctaaatggataaccatgcggatatggatagaacatt 36465115  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatcc 800  Q
    |||||||||||| ||  |||||||||| | | ||||||||||||||||||||    
T  36465116 gatttcatatttgtccaacggagcggatacaaatatcacactatccgcatcc 36465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 40714806 - 40714853
Alignment:
Q  395 gattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 441  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  40714806 gattgttgaagcaagaagctttgtttttgttgaatatgatgagcttta 40714853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 42555513 - 42555450
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatga 432  Q
    |||||||| |||||||| |||| ||||| |||||||||| | ||||||||||||||||||||||    
T  42555513 tttaaaaggaagtgaaagtggtcgggatcgttgaagcaataagctttgtttttgttgaatatga 42555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 33340782 - 33340712
Alignment:
Q  363 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 432  Q
    |||||| |||||||| |||||||| |||  || |||||||||||||| | |||||||||||||||||||||    
T  33340782 acgctcctttaaaaggaagtgaaagtggccggaattgttgaagcaagaaactttgtttttgttgaatatga 33340712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 36464760 - 36464831
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttt 440  Q
    ||||||||| ||||||| |||  |||||||||||| ||  | |||||||||||||||||||||| |||||||    
T  36464760 tttaaaagatagtgaaagtggccgggattgttgaaacattaagctttgtttttgttgaatatgatgagcttt 36464831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 8819241 - 8819313
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaag--agctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||| ||||||| |||| || |||||||||||||   ||||||||||||||||||||| | ||||||||    
T  8819241 tttaaaagatagtgaaagtggtcgg-attgttgaagcaaataagctttgtttttgttgaatattatgagcttta 8819313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 8819431 - 8819477
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    |||||||||||||||||||||||||| |||| || |||| |||||||    
T  8819431 ctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaattt 8819477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 36464943 - 36464989
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    |||||||||||||||||||||||||| |||| || |||| |||||||    
T  36464943 ctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaattt 36464989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 40714971 - 40715017
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    ||||||| |||||||||||||||||| |||| ||||||| |||||||    
T  40714971 ctaaaaacaaaagaaaatgcatgtgatgaacttttgtttttaaattt 40715017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 42555323 - 42555277
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    |||||||||||||||||||||||| | |||| ||||||| |||||||    
T  42555323 ctaaaaagaaaagaaaatgcatgttatgaacttttgtttttaaattt 42555277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 42555749 - 42555663
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatg 259  Q
    |||||||  ||||||| ||||| ||||||||||||||  ||| |||||||||||  |||||||||| | |  |||| ||||||||||    
T  42555749 agcggataccttaatggatatcaatgaataaaataaacagatattttaactaccaactaattaatgaatatgaatgtggatttaatg 42555663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 605
Target Start/End: Complemental strand, 51357180 - 51357134
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    |||||||||||||||||||||||||| |||| || |||| |||||||    
T  51357180 ctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaattt 51357134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 43624716 - 43624675
Alignment:
Q  212 gattttttaactacccgctaattaatggacacaaatgcggat 253  Q
    ||||||||||||||||||||||||||||| ||  ||||||||    
T  43624716 gattttttaactacccgctaattaatggatacggatgcggat 43624675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 51357499 - 51357458
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaata 309  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  51357499 acccgctattaaactgaataaattacataaataaccttaata 51357458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 561 - 802
Target Start/End: Original strand, 7987347 - 7987582
Alignment:
Q  561 aaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgttat 660  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |             |||||||||| ||||||||||||| ||||||||||||    
T  7987347 aaaaagaaaagaaaatggatgtgaagaacctttgtttctaaattttagctaaaaaaa------ttaaacaaatgttttattttatttttataaatgttat 7987440  T
Q  661 ccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatattt 760  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  7987441 ccatggatatctgtataaacccgcagatacctcaaaatccgcagattacccgctaaacggatatccgcacggatatggatagggtacggatttcatattt 7987540  T
Q  761 atctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||  |||||||||||| | |||||||| |||| ||||||||    
T  7987541 atccaacggagcggacacagatatcacaatatctgcatccat 7987582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 36583008 - 36583245
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |             || |||||||||||||||||||||  |||||||||    
T  36583008 ctaaaaagaaaagaaaatgcatgtgaagaacctttatttctaaattttagctaacaaaa------ttgaacaaattttttattttattttcataaatgtt 36583101  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||||||||||  ||| |||||||||||||| |  |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  36583102 atccatggatatctatataaactcgctgatacctcaaaatctgtggattacccgttaaacggatatccgcgcggatatgaatagggtacggatttcatat 36583201  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| ||||| ||||||   |||||| ||||| |||||||||    
T  36583202 ttatctaacggaacggacacggatatcatactatacgcatccat 36583245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 11481718 - 11481543
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||| |||| |||||    
T  11481718 acccgctattaaaccgagtaaattatgtaaataacctcaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttatcagttattacgct 11481619  T
Q  368 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    | ||||||||||||| ||||||||||||||||||||||||| |  ||||||| |||||||||||| ||||||||||    
T  11481618 cctttaaaagaaagtaaaaatggttgggattgttgaagcaaaatttttgtttatgttgaatatgatgagctttact 11481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 561 - 803
Target Start/End: Original strand, 7968555 - 7968791
Alignment:
Q  561 aaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgttat 660  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||||| |             |||| ||||||||||||||||||| ||||||||| ||    
T  7968555 aaaaagaaaagtaaatggatgtgaagaacctttgtttctaaaatttagctaaaaaaa------ttaagcaaattttttattttatttttataaatgtcat 7968648  T
Q  661 ccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatattt 760  Q
    | |||||||| | |||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  7968649 ctatggatatatgtataaacccgtggatacctcaaaatccgcggattacccgctaaacggatatccgcacggatatggatagggtacggatttcatattt 7968748  T
Q  761 atctgacggagcggacatatatatcacactatccgcatccatt 803  Q
    |||  ||||||||||||   ||||||||||||| |||||||||    
T  7968749 atccaacggagcggacacggatatcacactatctgcatccatt 7968791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 182 - 443
Target Start/End: Original strand, 8226968 - 8227248
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc---------- 271  Q
    ||||||| |||| |||| ||||||||||  ||| |||||||||||||||||||||| || ||  |||||||||||||||||| |||||||              
T  8226968 cttaatggatatacatggataaaataaacggatcttttaactacccgctaattaatagatacggatgcggatttaatggtatccacacccgcggatattc 8227067  T
Q  272 ------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca---attatc 362  Q
          ||||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||    ||||     
T  8227068 atacccgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccctaagtattgtgagtgttatcatcggttatt 8227167  T
Q  363 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    |||||| |||||||| |||||||| ||||||  ||||||||||||| | |||||||| |||||||||||| ||| ||||||    
T  8227168 acgctcctttaaaaggaagtgaaagtggttgacattgttgaagcaaaaactttgtttatgttgaatatgatgagttttact 8227248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 9762645 - 9762931
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc- 271  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||| ||||||||||||| |   |||||||||| ||||||| |||| ||     
T  9762645 agcggataccttaatggatatccatggataaaataaacagattttttaactacctgctaattaatggatatggatgcggatttgatggtatccacatcct 9762744  T
Q  272 ---------------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
                   ||||||||| ||| ||||||||||||||||||| ||||||||||||| |  ||||||||||||||| |||||||||||||||| |    
T  9762745 cggatatccatactcgctattaaatcgaataaattacataaataaccttaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttatta 9762844  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
     |||| |||||| |||||||  |||| ||| ||||||||||||||||||||| || ||||||| |||||||||||| || |||||||    
T  9762845 gttattacgctcctttaaaatgaagtaaaagtggttgggattgttgaagcaaaagttttgtttatgttgaatatgatgaactttact 9762931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 173 - 442
Target Start/End: Original strand, 7986921 - 7987206
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc- 271  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||||||||     
T  7986921 agcggataccttaatggatatccatggataaaataaacggatttgtcaactacctgctaattaatggatacggatgcggatttaatggtattcacacccg 7987020  T
Q  272 ---------------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
                   ||||||||||||| ||||||||||||||||||| |||| |||||||| |  |||||||| | | ||  |||||||| |||||| |    
T  7987021 cggatatccatacccgctattaaaccgaataaattacataaataaccttaataccattcaacttattaagaaaaaaacataggtattgtgaatgttatta 7987120  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttac 442  Q
     |||| |||||| |||||||| || ||||| |||||| ||||||||| |||||| |||||||||||||||||| || || ||||||    
T  7987121 gttattacgctcctttaaaaggaaatgaaagtggttgagattgttgatgcaagaactttgtttttgttgaataagatgaactttac 7987206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 650 - 802
Target Start/End: Complemental strand, 31005940 - 31005788
Alignment:
Q  650 ataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacgg 749  Q
    ||||||||||||||| || |||| ||||||||||| ||||||||||||||||  ||||| ||| |||||||||||||| ||| |||| ||||||| ||||    
T  31005940 ataaatgttatccatagagatctttataaatccgcagatacctcaaaatccgtggattatccgctaaacggatatccgcgcgaatatggatagggcacgg 31005841  T
Q  750 atttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||||||||| ||  ||||||||||||   ||||||||||||| ||||||||    
T  31005840 atttcatatttgtccaacggagcggacacggatatcacactatctgcatccat 31005788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 7968177 - 7968280
Alignment:
Q  170 cgtagcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacac 269  Q
    ||||||||||  ||||||| ||||||||| ||||||||||  ||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  7968177 cgtagcggataccttaatggatatccatggataaaataaacggatttttcaactacccgctaattaatggatacgcatgcggatttaatggtattcacac 7968276  T
Q  270 ccgc 273  Q
    ||||    
T  7968277 ccgc 7968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 36582650 - 36582750
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    ||||||| |||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||||| ||  ||||||||||||| |||| ||||||||    
T  36582650 agcggatatcttaatggatatccatgaataaaataaacggattttttaactatccactaattaatggatacggatgcggatttaatagtatacacacccg 36582749  T
Q  273 c 273  Q
    |    
T  36582750 c 36582750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 649 - 764
Target Start/End: Complemental strand, 13355727 - 13355612
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||||||||  | ||||||| |||||| || ||||||||||||||||| | ||||||| | |||||||||||||   || ||||||||||||||||    
T  13355727 tataaatgttatctttcgatatctgtataaacccacggatacctcaaaatccacggattacctgctaaacggatatccacacgaatatagatagggtacg 13355628  T
Q  749 gatttcatatttatct 764  Q
     |||||||||||||||    
T  13355627 tatttcatatttatct 13355612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 565 - 802
Target Start/End: Original strand, 8227370 - 8227584
Alignment:
Q  565 agaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgttatccat 664  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||||||||    
T  8227370 agaaaagaaaatgcgtgtgaagaacttttgtttctaaattttagctaaaaaaaa-----ttaaacaaattttttattttatttttataaatgttatccat 8227464  T
Q  665 ggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatct 764  Q
    |||||| | |||||| || |||||                  |||||| |||| |||||||||   |||||| ||||| |||||||||||||||||||||    
T  8227465 ggatatatgtataaacccacggat------------------tacccgctaaatggatatccgcatggatatggatagagtacggatttcatatttatct 8227546  T
Q  765 gacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||||   |||||||||||||| |||||||    
T  8227547 aacggagcggacacggatatcacactatccacatccat 8227584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 694 - 790
Target Start/End: Original strand, 9765250 - 9765346
Alignment:
Q  694 aaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacact 790  Q
    ||||||| | ||||||||| |||| ||||||||  |||||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||||||    
T  9765250 aaaatccacggattacccgctaaatggatatccacgcggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 649 - 799
Target Start/End: Complemental strand, 11481358 - 11481208
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    ||||||||||||||||| |||||| |||||| || |  ||| || ||||||||| |||||   | |||| | |||||||  ||||||| |||||| ||||    
T  11481358 tataaatgttatccatgaatatctgtataaacccacatatatctaaaaatccgcggattattggctaaatgaatatccgcacggatatggataggatacg 11481259  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatc 799  Q
     |||||||||||||||   |||||||||| | |||||||||||||||||||    
T  11481258 aatttcatatttatctattggagcggacacaaatatcacactatccgcatc 11481208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 36582829 - 36582896
Alignment:
Q  365 gctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    |||| |||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  36582829 gctcatttaaatggaagtgaaagtggttgggattgttgaatcaagagctttgtttttgttgaatatga 36582896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 28211643 - 28211733
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    |||||| ||||| ||| ||||||||||  ||| |||||||||||| |||||||||||| || |||||||||||||| |||| |||||||||    
T  28211643 ttaatggatatctatggataaaataaacggatattttaactacccactaattaatggatacgaatgcggatttaatagtatccacacccgc 28211733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 31006444 - 31006354
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    ||||||| |||||||| ||||||||| ||||||||||  ||| ||||||||| |||||||||||||||||| ||  ||||||||| |||||    
T  31006444 agcggatatcttaatggatatccatggataaaataaacggatattttaactatccgctaattaatggacacgaacacggatttaacggtat 31006354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 442
Target Start/End: Original strand, 7968350 - 7968434
Alignment:
Q  358 ttatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttac 442  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||| || ||||||||||||||| || || ||||||    
T  7968350 ttattacgctcctttaaaagaaaatgaaagtggttgggattgttgatgcaagaactatgtttttgttgaataagatgaactttac 7968434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 9763047 - 9763093
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  9763047 ctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaattt 9763093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 13355813 - 13355764
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13355813 ctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaaattttag 13355764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 6870321 - 6870409
Alignment:
Q  175 cggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    ||||| |||||||| ||||||||| ||||||||||   ||  |||||||||||| |||||||| || ||| |||| |||||||||||||    
T  6870321 cggatatcttaatggatatccatggataaaataaacatataatttaactacccgttaattaattgatacatatgcagatttaatggtat 6870409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 31006207 - 31006144
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 432  Q
    ||||||||||||||||| |||  || |||||||||||||| | |||||||||||||||||||||    
T  31006207 tttaaaagaaagtgaaagtggccggaattgttgaagcaagaaactttgtttttgttgaatatga 31006144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 6870554 - 6870631
Alignment:
Q  365 gctcttttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 441  Q
    |||| |||||||| |||||||| || | || |||||| |||||||| | |||||||||||||||||||| ||||||||    
T  6870554 gctcctttaaaaggaagtgaaagtgatcggaattgttaaagcaagaagttttgtttttgttgaatatgatgagcttta 6870631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 7968294 - 7968334
Alignment:
Q  271 cgctattaaaccgattaaattacataaataacctcaatatc 311  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  7968294 cgctattaaaccgaataaattacataaataaccttaatatc 7968334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 443
Target Start/End: Complemental strand, 13356031 - 13355929
Alignment:
Q  340 tattgtgagtgttatcaattatcacgctcttttaaaagaaag-tgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagct 438  Q
    |||||||| | |||| | |||| |||||| |||||||| ||| ||||| |||||| ||||||||||  |||  |||||||||||||||||| || ||| |    
T  13356031 tattgtgaatattattagttattacgctcctttaaaaggaaggtgaaagtggttgcgattgttgaaataag--ctttgtttttgttgaataggatgagtt 13355934  T
Q  439 ttact 443  Q
    |||||    
T  13355933 ttact 13355929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 8576760 - 8576522
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |              ||||||||||||||||||||||| ||||||||||    
T  8576760 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagctaataaaagg-----taaacaaattttttattttatttttataaatgtt 8576666  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| |||||| ||||||||||||||||||| || |||||| || |||| ||||||||| |||||||| ||||| |||||||||||||||    
T  8576665 atccatggatatctgtataaacccgcggatacctcaaaatcggcggattactcgctaaatggatatccgcgcggatatggatagagtacggatttcatat 8576566  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||| | ||||| ||||||   ||||||||||||||||||||||    
T  8576565 ttatttaacggaacggacacggatatcacactatccgcatccat 8576522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 173 - 443
Target Start/End: Complemental strand, 10788887 - 10788602
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| ||||||||||  || |||||||||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||    
T  10788887 agcggataccttaatggatatccatggataaaataaac-gaatttttaactacctgctaattaatggatacaaatgtggatttaatagtatccacacccg 10788789  T
Q  273 ----------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
                    |||||||||| | ||||||||||||||||||||||||||||||||| |  |||||||||||| ||  |||||||| ||||||||    
T  10788788 aggagatccatattcgctattaaaccaactaaattacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgattgttatca 10788689  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||||||    
T  10788688 attattacgctcctttaaaagaaagtgaaagtggttgggattgtttaagcaagagctttgtttttgttgaatatgatgaactttact 10788602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 559 - 799
Target Start/End: Complemental strand, 7622374 - 7622139
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  7622374 ctaaaaagaaaagaaaatgcatgtgaagaacctctgtttctaaattttagctaaagaaaa-----ttaaacaaattttttattttatttttataaatgtt 7622280  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||||||| |||||| |||||| ||||||||| |||||||||| | ||||| ||| |||| ||||||||  |||||||| |||| ||||| ||||||||||    
T  7622279 atccatgaatatctgtataaacccgcggataactcaaaatccacggattatccgctaaatggatatccacgcggatatggataaggtacagatttcatat 7622180  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatc 799  Q
    ||||   ||||| |||||| | ||||||||||||| |||||    
T  7622179 ttattcaacggaacggacacagatatcacactatctgcatc 7622139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 635 - 802
Target Start/End: Complemental strand, 5999472 - 5999314
Alignment:
Q  635 ttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggat 734  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||          |||||||| ||||||    
T  5999472 ttttattttatttttataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcggattact---------gatatccgcgcggat 5999382  T
Q  735 atagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    || ||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  5999381 atggatagggtacggatttcatatttatctaacggagcggacacggatatcacactatccgcatccat 5999314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 649 - 802
Target Start/End: Complemental strand, 28582075 - 28581920
Alignment:
Q  649 tataaatgttatccatggatatct--atataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggta 746  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||| ||||  |  ||||||||| |||||||||||||| ||||||||  ||||||||    
T  28582075 tataaatgttatccatggatatctgtatataaacccgcggatacctctaaatatgtggattacccgctaaacggatatccgcgcggatatgaatagggta 28581976  T
Q  747 cggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
     ||||||||||||||||| ||||||| |||||  |||||||||||||| |||||||    
T  28581975 tggatttcatatttatctaacggagcagacatggatatcacactatccacatccat 28581920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 34435002 - 34435155
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||||||||||||||||||| |||||| |  ||||||||||||||||| |  |||||||| |||||||||| |||  |||||||||||||||||      
T  34435002 tataaatgttatccatggatatctgtataaaccaacggatacctcaaaatccacgaattacccgctaaacggatacccgcacggatatagatagggtaga 34435101  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||||||| | |||||||| |   ||||||||||||||||||||||    
T  34435102 gatttcatatttatctaatggagcggatacggatatcacactatccgcatccat 34435155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 268 - 393
Target Start/End: Complemental strand, 8577039 - 8576914
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 367  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |  |||||||||||| ||  ||||||||||||||||| |||| |||||    
T  8577039 acccgctattaaaccgagtaaattatataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgagtgttatcagttattacgct 8576940  T
Q  368 cttttaaaagaaagtgaaaatggttg 393  Q
    | |||||||| |||||||| ||||||    
T  8576939 cctttaaaaggaagtgaaagtggttg 8576914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 35167915 - 35168068
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||||||  |||||||||||||  |||||||  ||||||||||    
T  35167915 tataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccacggattacccgcgaaacggatatccgcacggatatgaatagggtacg 35168014  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||| |||||||||| | |||| ||| |   |||||| ||||| |||||||||    
T  35168015 gattttatatttatctaatggagtggatacggatatcatactattcgcatccat 35168068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 625 - 760
Target Start/End: Original strand, 642234 - 642371
Alignment:
Q  625 taaacaaattttttattttatttatataaatgttatccatggatatct--atataaatccgcggatacctcaaaatccgcagattacccgttaaacggat 722  Q
    ||||||||||||||  ||| ||| ||||||||||||| |||||||| |  |||||||||  | ||||||||||||||||| ||||||| | |||||||||    
T  642234 taaacaaatttttttatttttttttataaatgttatcaatggatatatgtatataaatctacagatacctcaaaatccgcggattacctgctaaacggat 642333  T
Q  723 atccgtgcggatatagatagggtacggatttcatattt 760  Q
    |||||  ||||||| ||||| |||||||||||||||||    
T  642334 atccgcacggatattgatagagtacggatttcatattt 642371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 705 - 802
Target Start/End: Original strand, 10409193 - 10409290
Alignment:
Q  705 attacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||| ||||||||||||| || |||||| |||||||||||||||| |||||||||  |||||||| ||| |||||||||||||||  |||||||    
T  10409193 attacccgctaaacggatatccatgtggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccat 10409290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 7622714 - 7622614
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| ||||||||||  |||||||||  |||||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  7622714 agcggataccttaatggatatccatggataaaataaacggattttttatttacccgctaattaatggatacggatgcggatttaatggtatccacacccg 7622615  T
Q  273 c 273  Q
    |    
T  7622614 c 7622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 689 - 798
Target Start/End: Complemental strand, 10788457 - 10788346
Alignment:
Q  689 acctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacata--tatatca 786  Q
    ||||||||||| ||  |||| ||  |||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||||||||||| |   ||||||    
T  10788457 acctcaaaatctgcgaattatccactaaacggatatccgcgcggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatca 10788358  T
Q  787 cactatccgcat 798  Q
    ||||||||||||    
T  10788357 cactatccgcat 10788346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 641748 - 641837
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggta 262  Q
    ||||||| | |||||| ||||||||| ||||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||    
T  641748 agcggatattttaatggatatccatggataaaataaacggatattttaactatccgctaattaatggatacatatgaggatttaatggta 641837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 28582576 - 28582478
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc 271  Q
    |||||||  ||| ||| ||||||||| ||||||||||  ||| ||||||||||||| |||||| |||| |||||| |||||||||| |||| |||||||    
T  28582576 agcggataccttgatggatatccatggataaaataaacggatattttaactacccgttaattagtggatacaaatacggatttaatagtatccacaccc 28582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 35167186 - 35167279
Alignment:
Q  340 tattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 432  Q
    |||| ||||| |||| | |||| |||||| |||||||| |||||||| ||| || ||||||||||| ||| |||||||||||||||||||||||    
T  35167186 tattatgagtattattagttattacgctcctttaaaaggaagtgaaagtggatgcgattgttgaagtaagaagctttgtttttgttgaatatga 35167279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 730 - 802
Target Start/End: Original strand, 32292665 - 32292737
Alignment:
Q  730 cggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||   |||||| |||||||||||||||    
T  32292665 cggatatggatagggtatggatttcatatttatccaacggagcggacacggatatcatactatccgcatccat 32292737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 641971 - 642041
Alignment:
Q  374 aaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttact 443  Q
    |||| ||||| |||||||||| |||||||| |||||| |||||||||||||||||||||| ||| ||||||    
T  641971 aaaggaagtggaaatggttggaattgttgacgcaagaagctttgtttttgttgaatatgatgagttttact 642041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 35167005 - 35167095
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    |||||||  ||||||  ||||||||| ||||||||||  ||| |||||||||||||||||||||| || ||  ||| ||||||||||||||    
T  35167005 agcggataccttaatagatatccatggataaaataaacggatattttaactacccgctaattaattgatacggatgtggatttaatggtat 35167095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 35167406 - 35167455
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  35167406 ctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaacttttag 35167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 7622531 - 7622486
Alignment:
Q  396 attgttgaagcaagagctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  7622531 attgttgaagcaaaagctttgtttttgttgaatatgatgagattta 7622486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 34433722 - 34433771
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||||||    
T  34433722 ctaaaaagaaaagaaaacgcatatgatgaacatttgtttctaaattttag 34433771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 8577123 - 8577051
Alignment:
Q  200 ataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    ||||||||||  | ||||||||| | ||| ||||||||||| ||| |||| ||||||||||||| ||||||||    
T  8577123 ataaaataaacggtttttttaaccaaccgttaattaatggatacagatgcagatttaatggtatccacacccg 8577051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 10788486 - 10788454
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacct 591  Q
    |||||||||||||||||||||||||||||||||    
T  10788486 ctaaaaagaaaagaaaatgcatgtgaagaacct 10788454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 10408771 - 10408821
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 318  Q
    |||| |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  10408771 acccactattaaaccgagtaaattacataaataacgttaataccattcaac 10408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 642183 - 642223
Alignment:
Q  567 aaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  642183 aaaagaaaatgcatgtgatga-cctttgtttctaaattttag 642223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 8576909 - 8576876
Alignment:
Q  410 agctttgtttttgttgaatatgacgagctttact 443  Q
    ||||||||||||||||||||||| ||||||||||    
T  8576909 agctttgtttttgttgaatatgatgagctttact 8576876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 182 - 432
Target Start/End: Original strand, 38440138 - 38440404
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 273  Q
    ||||||| ||||||||  ||||||||||   |||||||||||||||||||||||||||| ||  |||||||||| ||||||| |||||| ||            
T  38440138 cttaatggatatccatagataaaataaacgaattttttaactacccgctaattaatggatacggatgcggatttgatggtatccacacctgcagatatcc 38440237  T
Q  274 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 365  Q
            ||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||  |||| |||||||||| | |||| |||    
T  38440238 atacccactattaaaccgagtaaattacataaataatctcaatatcattcaactttttaagaaaacaccctaggtattatgagtgttataagttattacg 38440337  T
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 432  Q
    ||| || ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38440338 ctccttcaaaaggaagtgaaagtggttgggattgttggagcaagagctttgtttttgttgaatatga 38440404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 185 - 443
Target Start/End: Original strand, 23809405 - 23809679
Alignment:
Q  185 aatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc----------- 273  Q
    |||| |||| |||| ||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||||               
T  23809405 aatggatattcatggataaaataaacaggttttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacccgcggatatccata 23809504  T
Q  274 -----tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctc 368  Q
         ||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||  ||  ||||||||||||||| | |||| ||||||    
T  23809505 cttgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacacgatacgtattgtgagtgttataagttattacgctc 23809604  T
Q  369 ttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
     |||||||| || ||||| ||||||||||||||||||||| || ||||||| |||||||||||| || |||||||    
T  23809605 ctttaaaaggaattgaaagtggttgggattgttgaagcaaaagatttgtttatgttgaatatgatgaactttact 23809679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 7767074 - 7766832
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttatttta--tttata--taaa 654  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||             | |||||||||||||||||||  ||||||  ||||    
T  7767074 ctaaaaagaaaagaaaatgcatgtaaagaacctttgtttctaaattttagataaaaaaga-----tgaaacaaattttttattttagttttataaataaa 7766980  T
Q  655 tgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttc 754  Q
    ||||||||||||| |||| ||||||  |||| |||| |||||||| || ||||||||| |||||||||||||   ||||||| |||| | |||  |||||    
T  7766979 tgttatccatggaaatctgtataaacgcgcgaatacttcaaaatctgcggattacccgctaaacggatatccacacggatatggataagatacatatttc 7766880  T
Q  755 atatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||  |||||||||||||  ||||||||||||||||||||||    
T  7766879 atatttatccaacggagcggacatgaatatcacactatccgcatccat 7766832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 23809795 - 23810034
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    ||||||||||||| ||||||||||||||||||||||||| | |||||||| |             |||||||| ||||||||||||||| ||||||||||    
T  23809795 ctaaaaagaaaagtaaatgcatgtgaagaacctttgtttatgaattttagctaaaaaaaaaa---ttaaacaa-ttttttattttatttttataaatgtt 23809890  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||  |||||||||| ||||||  ||||||||||| ||||||||  |||||| || |||| ||||||||   ||||||| |||||||||||||||||||||    
T  23809891 atttatggatatctgtataaactcgcggatacctaaaaatccgtggattactcgctaaatggatatccccacggatatggatagggtacggatttcatat 23809990  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||| |||||| |||||   ||||| ||||||||||||||||    
T  23809991 ttatctaacggagtggacacggatatcgcactatccgcatccat 23810034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 182 - 421
Target Start/End: Complemental strand, 5973391 - 5973136
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 273  Q
    ||||||| | ||||||  ||||||||||   |||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||            
T  5973391 cttaatggaaatccattgataaaataaacgaattttttaactatccactaattaatggatacagatgcggatttaatggtattcacacccgcggatatcc 5973292  T
Q  274 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 365  Q
            ||||||| ||| ||||||||||||||||||||||||||||||||| |  ||| ||||   ||||  ||||||||||||||||| |||| |||    
T  5973291 atacccgctattaaatcgagtaaattacataaataacctcaatatcattcaacttcctaaaaaaaacacctaggtattgtgagtgttatcagttattacg 5973192  T
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgttttt 421  Q
    |||||||||||| || ||||| ||||||||||||||||||||| | ||||||||||    
T  5973191 ctcttttaaaaggaattgaaagtggttgggattgttgaagcaaaacctttgttttt 5973136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 559 - 802
Target Start/End: Complemental strand, 33189402 - 33189165
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||| |             |||||||||||||||||||||||| | ||||||||    
T  33189402 ctaaaaagaaaagaaaacacatgtgaagaacctttgtttctgaattttagctaaaaaaa------ttaaacaaattttttattttatttttttaaatgtt 33189309  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    |||||||||||||| ||||||  || | |||||||||||||    ||||||||| ||||||||||||| ||||||||| ||||||| ||  |||||||||    
T  33189308 atccatggatatctgtataaactcgtgaatacctcaaaatctatggattacccgctaaacggatatccatgcggatattgatagggcacatatttcatat 33189209  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||  |||||| |||||   |||||| |||||| ||||||||    
T  33189208 ttatcaaacggagtggacacggatatcaaactatctgcatccat 33189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 559 - 802
Target Start/End: Original strand, 38440561 - 38440797
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||| |             |||||||||||||||||||||||| ||||||||||    
T  38440561 ctaaaaagaaaagaaaatccatgtgaagaatctttgtttctaaattttagctaaaaaaaaagaa-ttaaacaaattttttattttatttttataaatgtt 38440659  T
Q  659 atccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatat 758  Q
    ||| |||||||||| |||||| | || ||||||||||||||| |  |||||| | |||| |||||| || ||||||||      | |||| |||||||||    
T  38440660 atctatggatatctgtataaacctgcagatacctcaaaatccacgaattacctgctaaatggatattcgcgcggatat------gatacgaatttcatat 38440753  T
Q  759 ttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||  ||| ||||||||   ||||||||||||||||||||||    
T  38440754 ttatccaacgaagcggacacgaatatcacactatccgcatccat 38440797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 633 - 790
Target Start/End: Complemental strand, 25502084 - 25501927
Alignment:
Q  633 ttttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcgg 732  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| ||  ||||||  | |||||||||||| | |||     
T  25502084 ttttttattttatttttataaatgttatccatggatatctgtataaacccgcggatacctcaaaattcgtggattactagctaaacggatatctgcgcgt 25501985  T
Q  733 atatagatagggtacggatttcatatttatctgacggagcggacatatatatcacact 790  Q
    ||||  ||||||||   ||||||||||||||| |||||||| ||||  ||||||||||    
T  25501984 atatgaatagggtataaatttcatatttatctaacggagcgaacatggatatcacact 25501927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 182 - 443
Target Start/End: Original strand, 11038913 - 11039190
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 273  Q
    ||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||||| | |   || ||||||||||||||| |||||||||            
T  11038913 cttaatggatattcatggataaaataaacggattttttaactacccgctaattaatgaatatggatacggatttaatggtatccacacccgcagatatcc 11039012  T
Q  274 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 365  Q
            ||||||||||| |||||| ||||||||| || |||| ||||| || |  |||||||| ||| ||  |||||||||||||||   |||| |||    
T  11039013 ataccggctattaaaccgagtaaatttcataaataagcttaataccattccacttcctaagaaaaaaccatacgtattgtgagtgttattcgttattacg 11039112  T
Q  366 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||| |||||||| |||| ||| |||||||||||||||| |||| | |||||||||| |||||||||| || |||||||    
T  11039113 ctcctttaaaaggaagtaaaagtggttgggattgttgatgcaatatctttgtttttattgaatatgatgaactttact 11039190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 662 - 802
Target Start/End: Original strand, 30541697 - 30541837
Alignment:
Q  662 catggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatattta 761  Q
    ||||||||||| |||||| | |||||||||||||||||| | || ||| |||| || ||||||||| |||||||| |||||||||||||||||||||| |    
T  30541697 catggatatctgtataaacctgcggatacctcaaaatccacggagtactcgttcaatggatatccgcgcggatatggatagggtacggatttcatattaa 30541796  T
Q  762 tctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||  |||||||||| |   |||||| |||||||||||||||    
T  30541797 tccaacggagcggatacgaatatcatactatccgcatccat 30541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 27337409 - 27337282
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| || ||  |||||||||||||||||| | ||||||    
T  27337409 agcggataccttaatggatatccacgaataaaataaatggatattttaactacccgctaattaatagatacggatgcggatttaatggtatccgcacccg 27337310  T
Q  273 ctattaaaccgattaaattacataaata 300  Q
    ||||||||| || | |||||| ||||||    
T  27337309 ctattaaactgagtgaattacgtaaata 27337282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 625 - 802
Target Start/End: Original strand, 11039367 - 11039543
Alignment:
Q  625 taaacaaattttttattttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatat 724  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||| |||||| |||| ||||||||||||| ||  || |||||| | ||||||||     
T  11039367 taaacagattttttattttatttttataaatgtcatccatggatatctgtataaacccgcagatacctcaaaattcgtgga-tacccgctgaacggatac 11039465  T
Q  725 ccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||  ||||||| |||| |||||  ||||||||||||||  |||||| |||||   |||||| | |||| ||||||||    
T  11039466 ccgcacggatatggatatggtacaaatttcatatttatccaacggagtggacacggatatcatattatctgcatccat 11039543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 653 - 802
Target Start/End: Complemental strand, 27336863 - 27336714
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||   ||||| ||| |||| |||||||||   |||||| ||||||||  |||||    
T  27336863 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtctggatt 27336764  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| ||| || |||||   ||||||||||||| ||||||||    
T  27336763 tcatatttatctaacgaagtggacacggatatcacactatctgcatccat 27336714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 2944272 - 2944425
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||||||||||  ||||||||| |||||||||||| |  | |||||  |||||||||     
T  2944272 tataaatattatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatctggacagatatgaatagggtaca 2944371  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    | ||||||| ||||   || |||||||||   ||||||||| |||| |||||||    
T  2944372 gttttcatacttatacaacagagcggacacggatatcacaccatccacatccat 2944425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 33189730 - 33189630
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| ||||| ||| |||||||| ||||||||    
T  33189730 agcggataccttaatggatatccatggataaaataaacggattttttaactacccgctaattaatggatacagatgcgaattcaatggtatccacacccg 33189631  T
Q  273 c 273  Q
    |    
T  33189630 c 33189630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 30541205 - 30541490
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||||| ||||||||||   || ||||||||||||||||||||||||| |   |||| ||||||||||||||  ||||||    
T  30541205 agcggataccttaatggatatccatggataaaataaacgaatattttaactacccgctaattaatggatatggatgccgatttaatggtatttgcacccg 30541304  T
Q  273 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 356  Q
    |                ||||||||||| |||  |||||||||||||| |||| | |||||| |  |||| ||| |||||   ||||||||||||||| |    
T  30541305 cagatatccatatccgttattaaaccgagtaagatacataaataacct-aataactttcaacttcctaagcaaaaacccttggtattgtgagtgttatta 30541403  T
Q  357 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttact 443  Q
     |||| || ||| |||||||| |||||||| |||||| ||||||||||| ||| | ||||| ||||||||||||||| ||||||||||    
T  30541404 gttattacactcctttaaaaggaagtgaaagtggttgagattgttgaagtaagaaactttg-ttttgttgaatatgatgagctttact 30541490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 36299214 - 36299124
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    ||||||| |||||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||| |||||||  |||||||||||||    
T  36299214 agcggatatcttaatggatatccatggataaaataaatgaatattttaactacccgctaattaatggatacaaatgttgatttaatggtat 36299124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 699 - 798
Target Start/End: Complemental strand, 5972855 - 5972756
Alignment:
Q  699 ccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcat 798  Q
    |||| ||||||||| |||| |||||||||  || |||| ||||||||||||||||||||||||||| ||||||| ||||   ||||||||||||||||||    
T  5972855 ccgcggattacccgctaaatggatatccgcacgtatatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcat 5972756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 7767396 - 7767309
Alignment:
Q  183 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc 270  Q
    |||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||  || | ||||||||||||| ||||||    
T  7767396 ttaatggatatccatgaataaaataaacggattttttaactaccccctaattaatggacacggattcagatttaatggtatccacacc 7767309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 649 - 802
Target Start/End: Original strand, 22519394 - 22519547
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||| ||||||||||||| | |||||| |||  ||||||| ||||| ||  ||||||| | |||| ||||||||  |||||||  |||||||||||    
T  22519394 tataaatgatatccatggatatttgtataaacccgatgataccttaaaattcgtggattacctgctaaatggatatccacgcggatacggatagggtacg 22519493  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||||||| |||||  || |||| |||| | |||| |||||||||| ||||||    
T  22519494 gatttcataattatccaaccgagcagacaaaaatattacactatccgtatccat 22519547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 25502319 - 25502257
Alignment:
Q  381 gtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  25502319 gtgaaagtggttgggattgttgaagcaagatctttgtttttgttgaatatgatgaactttact 25502257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 36298975 - 36298903
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||| ||||||| |||| |||||||||||||||| | |||||||||||||||||||||| ||||||||    
T  36298975 tttaaaagatagtgaaagtggtcgggattgttgaagcaataagctttgtttttgttgaatatgatgagcttta 36298903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 649 - 724
Target Start/End: Complemental strand, 36298703 - 36298628
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatat 724  Q
    ||||| |||||||||||||||||| ||||||| | ||||||||||||||| || |||||||||| |||| ||||||    
T  36298703 tataagtgttatccatggatatctgtataaattcacggatacctcaaaattcgtagattacccgctaaatggatat 36298628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 1052778 - 1052868
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||| ||||||||||||||||||||||||| |   ||| ||||||||||||||    
T  1052778 agcggataccttaatggatatccatggataaaataaacggatattttaactacccgctaattaatggataaggatgtggatttaatggtat 1052868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 25502151 - 25502102
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  25502151 ctaaaaagaaaataaaatgcatctgaagaacctttgtttctaaattttag 25502102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 31457464 - 31457392
Alignment:
Q  370 tttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||||||||||||| | || ||||||||||||||||| || |||||||||||||||||||| || |||||    
T  31457464 tttaaaagaaagtgaaagtagtcgggattgttgaagcaagaagttttgtttttgttgaatatgatgaacttta 31457392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 11039306 - 11039355
Alignment:
Q  559 ctaaaaagaaaa-gaaaatgcatgtgaagaacctttgtttctaaatttta 607  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  11039306 ctaaaaagaaaaagaaaatgcatgtgaagaacctttatttctaaatttta 11039355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 40910612 - 40910661
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  40910612 ctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaattttag 40910661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 679
Target Start/End: Complemental strand, 5972971 - 5972857
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttagatnnnnnnnnnnnnnttaaacaaattttttattttatttatataaatgtt 658  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||| |             |||||||| | ||||||||||||| ||||||||||    
T  5972971 ctaaaatgaaaagaaaatgcctgtgaagaacc-ttgtttctaaattttagct-----aaaaaaacttaaacaattattttattttatttgtataaatgtt 5972878  T
Q  659 atccatggatatctatataaa 679  Q
    |||||||||||| | ||||||    
T  5972877 atccatggatatttgtataaa 5972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 605
Target Start/End: Original strand, 15954754 - 15954800
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattt 605  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||    
T  15954754 ctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaattt 15954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 22519130 - 22519192
Alignment:
Q  371 ttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 432  Q
    ||||||| |||||||| |||| |||||||||||| |||| | |||||||||||||||||||||    
T  22519130 ttaaaaggaagtgaaagtggtcgggattgttgaaacaagaaactttgtttttgttgaatatga 22519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 30541606 - 30541655
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    ||||||| |||||||||||||||||| |||||| | ||||||||||||||    
T  30541606 ctaaaaataaaagaaaatgcatgtgatgaacctatttttctaaattttag 30541655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 47925237 - 47925156
Alignment:
Q  182 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 263  Q
    ||||||| |||||| |  ||||||||||| ||| ||||||||||||  ||||||||||| || || | ||||||||||||||    
T  47925237 cttaatggatatccttagataaaataaatagatattttaactacccattaattaatggatacgaaagtggatttaatggtat 47925156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 2943798 - 2943869
Alignment:
Q  201 taaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 273  Q
    |||||||||  ||| |||||||||||||||||||||| || || ||||| ||||||||||||| |||| ||||    
T  2943798 taaaataaacggatattttaactacccgctaattaat-gatacgaatgcagatttaatggtatccacatccgc 2943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 2944195 - 2944243
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaatttta 607  Q
    |||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  2944195 ctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaattttta 2944243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 559 - 597
Target Start/End: Complemental strand, 31457266 - 31457228
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgttt 597  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  31457266 ctaaaaagaaaagaaaatgcatgtgatgaacttttgttt 31457228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 1052892 - 1052933
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaata 309  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||    
T  1052892 acccgctattataccgaataaattacataaataaccttaata 1052933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 802
Target Start/End: Original strand, 1053355 - 1053436
Alignment:
Q  721 atatccgtgcggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    ||||||||| ||||||  ||| || || |||||||||||| ||| | ||||||||||   ||||||||||||| ||||||||    
T  1053355 atatccgtgtggatatgaataaggcacagatttcatatttgtctaatggagcggacacggatatcacactatctgcatccat 1053436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 15953904 - 15953945
Alignment:
Q  268 acccgctattaaaccgattaaattacataaataacctcaata 309  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||    
T  15953904 acccgctattaaatcgagtaaattacataaataaccttaata 15953945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 653 - 802
Target Start/End: Complemental strand, 7838 - 7689
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  ||||||| || ||||||||||||||||   ||||| ||| |||| |||||||||   |||||| |||||||||||||||    
T  7838 aatgttatccatggatatccgtataaattcgtggatacctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtacggatt 7739  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| |||||| |||||   ||||||||||||||||||||||    
T  7738 tcatatttatctaacggagtggacacggatatcacactatccgcatccat 7689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 653 - 802
Target Start/End: Complemental strand, 21985 - 21836
Alignment:
Q  653 aatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacggatt 752  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||   ||||| ||| || | |||||||||   |||||| |||||||||||||||    
T  21985 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctatatggatatccgcatggatatggatagggtacggatt 21886  T
Q  753 tcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| |||||| |||||   ||||||||||||||||||||||    
T  21885 tcatatttatctaacggagtggacacggatatcacactatccgcatccat 21836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 22386 - 22286
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  22386 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 22287  T
Q  273 c 273  Q
    |    
T  22286 c 22286  T

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Target: scaffold0155 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 6672 - 6821
Alignment:
Q  181 tcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatgg----------------tatt 264  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| ||  ||||||||||| ||| |||||||||||||||                ||||    
T  6672 tcttaatgaatatccatggataaaataaatggattttctaactaaccattaattaatggatacagatgcggatttaatggtatccacacccgtggatatt 6771  T
Q  265 cacacccgctattaaaccgattaaattacataaataacctcaatatcatt 314  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6772 catacccgctattaaaccgagtaaattacataaataacctcaatatcatt 6821  T

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Target: scaffold0155; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 559 - 608
Target Start/End: Original strand, 7008 - 7057
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7008 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttcaaaattttag 7057  T

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Target: scaffold0155; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 639 - 712
Target Start/End: Original strand, 7085 - 7158
Alignment:
Q  639 attttatttatataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccg 712  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| | |||||| |||||| || |||||||||    
T  7085 attttatttttataaatgttatccatggatatctgtataaatccgtgaatacctaaaaatctgcggattacccg 7158  T

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Target: scaffold0155; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 6820 - 6892
Alignment:
Q  371 ttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttact 443  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||| |||| |||||||||||| || |||||||    
T  6820 ttaaaaggaagtgaaagtggttgggattgttgaagcaaaagcttcgtttatgttgaatatgatgaactttact 6892  T

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Target: scaffold0155; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 731 - 802
Target Start/End: Original strand, 7162 - 7232
Alignment:
Q  731 ggatatagatagggtacggatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||||||||| ||||||||||||||| || ||||||| | | ||||||||||||| ||||||||    
T  7162 ggatatagatagggtacgaatttcatatttatctaac-gagcggatacagatatcacactatctgcatccat 7232  T

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Target: scaffold0634 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 8989 - 9089
Alignment:
Q  173 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 272  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||||| ||  |||| ||||||||||||| | ||||||    
T  8989 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgttaattaatggatacggatgctgatttaatggtatccgcacccg 9088  T
Q  273 c 273  Q
    |    
T  9089 c 9089  T

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Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 649 - 802
Target Start/End: Complemental strand, 66522 - 66369
Alignment:
Q  649 tataaatgttatccatggatatctatataaatccgcggatacctcaaaatccgcagattacccgttaaacggatatccgtgcggatatagatagggtacg 748  Q
    |||||||  ||||||||||||||| |||||  ||||||||||||||||||||    |||||||| ||||   |||| ||  | ||||| |||||||  |     
T  66522 tataaatagtatccatggatatctgtataatcccgcggatacctcaaaatccatgaattacccgctaaataaatattcgcacagatatggatagggctca 66423  T
Q  749 gatttcatatttatctgacggagcggacatatatatcacactatccgcatccat 802  Q
    |||||||||||| ||  | ||||| |||| | ||||||||||||||||||||||    
T  66422 gatttcatatttgtccaatggagctgacacaaatatcacactatccgcatccat 66369  T

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Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 66706 - 66644
Alignment:
Q  380 agtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagcttta 441  Q
    ||||||| |||| |||| |||||||||||| || |||||||||| ||||||||| ||||||||    
T  66706 agtgaaagtggtcgggactgttgaagcaagaagttttgtttttggtgaatatgatgagcttta 66644  T

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Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 704 - 764
Target Start/End: Original strand, 10777 - 10837
Alignment:
Q  704 gattacccgttaaacggatatccgtgcggatatagatagggtacggatttcatatttatct 764  Q
    ||||||||| |||||||||||||| | ||||||  ||||||||||||||||||||||||||    
T  10777 gattacccgctaaacggatatccgcgtggatatgaatagggtacggatttcatatttatct 10837  T

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Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 62482 - 62433
Alignment:
Q  559 ctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaattttag 608  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  62482 ctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaattttag 62433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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