View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18908_high_3 (Length: 548)

Name: NF18908_high_3
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18908_high_3
NF18908_high_3
[»] chr7 (9 HSPs)
chr7 (1-532)||(1093775-1094328)
chr7 (400-532)||(1570912-1571044)
chr7 (399-532)||(1562901-1563035)
chr7 (111-158)||(1562742-1562789)
chr7 (95-152)||(374978-375033)
chr7 (327-377)||(1562844-1562894)
chr7 (327-381)||(1571048-1571102)
chr7 (89-156)||(1571599-1571664)
chr7 (217-273)||(9352644-9352700)
[»] chr8 (4 HSPs)
chr8 (327-529)||(18736113-18736315)
chr8 (238-286)||(18732950-18732998)
chr8 (158-204)||(18735814-18735860)
chr8 (238-269)||(8683667-8683698)
[»] chr6 (3 HSPs)
chr6 (198-289)||(24497042-24497133)
chr6 (158-210)||(24496902-24496954)
chr6 (239-284)||(2457312-2457357)
[»] chr5 (1 HSPs)
chr5 (123-152)||(17734030-17734059)
[»] chr1 (1 HSPs)
chr1 (240-281)||(33651754-33651795)
[»] chr2 (1 HSPs)
chr2 (191-259)||(24011879-24011947)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 1094328 - 1093775
Alignment:
Q  1 cacaaaagaaactgaaaatgcaaaaattgaaaacataggcatatata-----------ttagatatgcccagtgttggggaatgttttccattctacgaa 89  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||           |||||||||||||||||||||||| |||||||||||||||||    
T  1094328 cacaaaagaaactgaacatgcaaaaattgaaaacataggcaaatataatttgtttatattagatatgcccagtgttggggaaagttttccattctacgaa 1094229  T
Q  90 ttgttatcaactccaaacattaaaagtaaaagtaccagtgttgtcaaatagcggctatagcattgcgg-----------attgttatttttccacggtac 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  1094228 ttgttatcaactccaaacattaaaagtaaaagtaccagtgttgtcaaatagcggctatagcattgcggggtttgaacaaattgttatttttccacggtac 1094129  T
Q  179 gctatttagtagtgttgtcaaataaaggctatagcggggctataacattgtagtgtatgagaatttgaacaaactacaattttctgtgatctgcggttga 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1094128 gctatttagtagtgttgtcaaataaaggctatagcggggctataacattgtagtgtatgagaatttgagcaaactacaattttctgtgatctgcggttga 1094029  T
Q  279 caacacttaaatgtttgaacaaagaatacagataaactgggttataaaagttgataatgcattgtcggtcaaaagtttatcttcggcatataactcagag 378  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1094028 caacacttaaatgtttgaacaaagaatatagataaactgggttataaaagttgataatgcattgtcggtcaaaagttgatcttcggcatataactcagag 1093929  T
Q  379 ttatgctgggatgaagcattagcaaaactacctggaaccagaatttctttaccgggaaaagaagcagaattatgaacagaacgattcaatccattagatg 478  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  1093928 ttatgctgggatgaagtattagcaaaactacctggaaccggaatttctttaccggtaaaagaagcagaattatgaacggaacgattcaatccattagatg 1093829  T
Q  479 gcccaattatgtttgattgagttccagaacagaactttccaggattttcatttt 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1093828 gcccaattatgtttgattgagttccagaacagaactttccaggattttcatttt 1093775  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 400 - 532
Target Start/End: Complemental strand, 1571044 - 1570912
Alignment:
Q  400 gcaaaactacctggaaccagaatttctttaccgggaaaagaagcagaattatgaacagaacgattcaatccattagatggcccaattatgtttgattgag 499  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||||||    
T  1571044 gcaaaactacctggaactggaatttctttaccggcaaaagaagcagaattatggacagaacgattaaatccattagattgcccaactatgttcgattgag 1570945  T
Q  500 ttccagaacagaactttccaggattttcatttt 532  Q
    || |||||||||||||||| |||||||||||||    
T  1570944 ttgcagaacagaactttcctggattttcatttt 1570912  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 399 - 532
Target Start/End: Original strand, 1562901 - 1563035
Alignment:
Q  399 agcaaaactacctgg-aaccagaatttctttaccgggaaaagaagcagaattatgaacagaacgattcaatccattagatggcccaattatgtttgattg 497  Q
    ||||||||||||||| |||  |||||||||||| || |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||     
T  1562901 agcaaaactacctgggaactggaatttctttacgggcaaaagaggcagaattatgaacagaacgattaaatccattcgatggcccaattatgttcgattc 1563000  T
Q  498 agttccagaacagaactttccaggattttcatttt 532  Q
    |||| |||||||||||||||| | |||||||||||    
T  1563001 agttgcagaacagaactttcctgtattttcatttt 1563035  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 1562742 - 1562789
Alignment:
Q  111 aaaagtaaaagtaccagtgttgtcaaatagcggctatagcattgcgga 158  Q
    |||| |||| ||||||||||||||||||||  ||||||||||||||||    
T  1562742 aaaattaaaggtaccagtgttgtcaaatagaagctatagcattgcgga 1562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 375033 - 374978
Alignment:
Q  95 atcaactccaaacattaaaagtaaaagtaccagtgttgtcaaatagcggctatagcat 152  Q
    ||||||||||||| ||||   ||||||||||||| ||||||||||||| |||||||||    
T  375033 atcaactccaaacgttaat--taaaagtaccagtattgtcaaatagcgactatagcat 374978  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 1562844 - 1562894
Alignment:
Q  327 agttgataatgcattgtcggtcaaaagtttatcttcggcatataactcaga 377  Q
    |||||||||||||||||| |||| ||||| |||||  ||||||||||||||    
T  1562844 agttgataatgcattgtcagtcataagttgatctttcgcatataactcaga 1562894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 1571102 - 1571048
Alignment:
Q  327 agttgataatgcattgtcggtcaaaagtttatcttcggcatataactcagagtta 381  Q
    |||||||||||||||||| |||| ||||| |||||| ||| |||||||||| |||    
T  1571102 agttgataatgcattgtcagtcataagttgatcttccgcaaataactcagattta 1571048  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 1571664 - 1571599
Alignment:
Q  89 attgttatcaactccaaacattaaaagtaaaagtaccagtgttgtcaaatagcggctatagcattgcg 156  Q
    ||||||||||||||||||  ||||  ||||| | ||  ||||||||||||||| ||||||||||||||    
T  1571664 attgttatcaactccaaaatttaa--gtaaaggcactggtgttgtcaaatagcagctatagcattgcg 1571599  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 9352644 - 9352700
Alignment:
Q  217 gctataacattgtagtgtatgagaatttgaacaaactacaattttctgtgatctgcg 273  Q
    ||||||||||||| |||||| | |||||||||||||| | ||||||||  |||||||    
T  9352644 gctataacattgttgtgtattaaaatttgaacaaactgctattttctgctatctgcg 9352700  T

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Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 327 - 529
Target Start/End: Original strand, 18736113 - 18736315
Alignment:
Q  327 agttgataatgcattgtcggtcaaaagtttatcttcggcatataactcagagttatgctgggatgaagcattagcaaaactacctggaaccagaatttct 426  Q
    ||||||||||| |||||| |||| ||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18736113 agttgataatgtattgtcagtcataagctgatcttcgacatataactcagatttatgctgggatgaagcattagcaaaactacctggaaccggaatttct 18736212  T
Q  427 ttaccgggaaaagaagcagaattatgaacagaacgattcaatccattagatggcccaattatgtttgattgagttccagaacagaactttccaggatttt 526  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||| ||||||||||||||||| ||||||    
T  18736213 ttaccggcaaaagaagcagaattatgaacagaacgattaaatccattagattgcccaactatgttcgattgagttgcagaacagaactttccacgatttt 18736312  T
Q  527 cat 529  Q
    |||    
T  18736313 cat 18736315  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 18732950 - 18732998
Alignment:
Q  238 agaatttgaacaaactacaattttctgtgatctgcggttgacaacactt 286  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  18732950 agaatttgaacaaactacaattttctgtgatccgcggttggcaagactt 18732998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 18735814 - 18735860
Alignment:
Q  158 attgttatttttccacggtacgctatttagtagtgttgtcaaataaa 204  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  18735814 attgttatttttccacggtactctatttagtagtgctgtcaactaaa 18735860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 269
Target Start/End: Original strand, 8683667 - 8683698
Alignment:
Q  238 agaatttgaacaaactacaattttctgtgatc 269  Q
    ||||||||||||||||||||||||||||||||    
T  8683667 agaatttgaacaaactacaattttctgtgatc 8683698  T

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Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 24497042 - 24497133
Alignment:
Q  198 aaataaaggctatagcggggctataacattgtagtgtatgagaatttgaacaaactacaattttctgtgatctgcggttgacaacacttaaa 289  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| | ||||||| |  |||||| |||||||||    
T  24497042 aaataaaggctatagcggggctataacattttagtgtaggagaatttgaacaaactataattctttgtgatccgtagttgaccacacttaaa 24497133  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 24496902 - 24496954
Alignment:
Q  158 attgttatttttccacggtacgctatttagtagtgttgtcaaataaaggctat 210  Q
    |||| |||||||||||||||| |||||||  || |||||||||||||||||||    
T  24496902 attgatatttttccacggtacactatttaacagcgttgtcaaataaaggctat 24496954  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 2457312 - 2457357
Alignment:
Q  239 gaatttgaacaaactacaattttctgtgatctgcggttgacaacac 284  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||||    
T  2457312 gaatttgaacaaactgctattttctgcgatctgcgattgacaacac 2457357  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 17734030 - 17734059
Alignment:
Q  123 accagtgttgtcaaatagcggctatagcat 152  Q
    ||||||||||||||||||||||||||||||    
T  17734030 accagtgttgtcaaatagcggctatagcat 17734059  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 33651754 - 33651795
Alignment:
Q  240 aatttgaacaaactacaattttctgtgatctgcggttgacaa 281  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  33651754 aatttgaacaaactactattttctgtgatctgcaattgacaa 33651795  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 24011947 - 24011879
Alignment:
Q  191 tgttgtcaaataaaggctatagcggggctataacattgtagtgtatgagaatttgaacaaactacaatt 259  Q
    |||||| ||||| ||||||||||   ||||||||||||| |||||   ||||||||||||||| |||||    
T  24011947 tgttgttaaatagaggctatagcattgctataacattgttgtgtagcggaatttgaacaaactgcaatt 24011879  T

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