View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_high_8 (Length: 420)
Name: NF18908_high_8
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 25320633 - 25320817
Alignment:
| Q |
9 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
108 |
Q |
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| T |
25320633 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
25320732 |
T |
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| Q |
109 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaaggagagagtgcaaaaaagaagg |
195 |
Q |
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| T |
25320733 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaag--gagagtgcaaaaaagaagg |
25320817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 252 - 405
Target Start/End: Original strand, 25320870 - 25321023
Alignment:
| Q |
252 |
aatatgaaggtttgtaacatcatagatataataaaaactttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattca |
351 |
Q |
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| T |
25320870 |
aatatgaaggtttgtaacatcatagatataataaaaactttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattca |
25320969 |
T |
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| Q |
352 |
tgcaagtatttcaccctagaccaatcatccaacgatgaattactagatgttttt |
405 |
Q |
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| T |
25320970 |
tgcaagtatttcaccctagaccaatcatccaacgatgaattactaaatgttttt |
25321023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 25326440 - 25326588
Alignment:
| Q |
9 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
108 |
Q |
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| T |
25326440 |
agcagagagcttaggttgtctcttcaagtttggatccttcatatctatgtagtatagaccaaaactttcttcatatccactcagtatttcaagcacatcc |
25326539 |
T |
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| Q |
109 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaa |
157 |
Q |
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| T |
25326540 |
atgaaggaccatacaaaataaccttttatattcgatccactcctttcaa |
25326588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 394
Target Start/End: Original strand, 25326661 - 25326764
Alignment:
| Q |
291 |
ttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattcatgcaagtatttcaccctagaccaatcatccaacgatgaa |
390 |
Q |
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||||| ||| ||||| || ||||||||||||| | ||||||| ||| || ||||||||| ||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
25326661 |
ttatatttgaaaatcaaagtagaagtaccttatttcattagctatggtctcaatgtatttatgcaagtacttcaccctagaccaatcattcaaggatgaa |
25326760 |
T |
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| Q |
391 |
ttac |
394 |
Q |
| |
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|||| |
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|
| T |
25326761 |
ttac |
25326764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 5216370 - 5216486
Alignment:
| Q |
16 |
agtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagc |
115 |
Q |
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||||||||||| ||| |||| ||||||| | || ||||| || |||||||||||||||| |||||||||||| | ||| || ||| ||||||| ||| |
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| T |
5216370 |
agtttaggttgcctcctcaaggttggatcttccaaatctatgtaatataagccataacttgcttcatatccacctagtaactcaaacacatccaaaaagg |
5216469 |
T |
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| Q |
116 |
accatacaaaataacct |
132 |
Q |
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||||||||| |||||| |
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| T |
5216470 |
cccatacaaagtaacct |
5216486 |
T |
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