View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18908_high_9 (Length: 416)
Name: NF18908_high_9
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 3018655 - 3018818
Alignment:
| Q |
17 |
tacatagaaactaaaccaaacaactaaagaaacaaacccagatatctcaaaactttttcccttgctacaaactaaaagcattaatgatctcaataatact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018655 |
tacatagaaactaaaccaaacaactaaagaaacaaacccagatatctcaaaactttttcccttgctacaaactaaaagcattaatgatctcaataatact |
3018754 |
T |
|
| Q |
117 |
actaatttgtaatattctaccttaaaaatatgcaaactttcaccaaataaaccaattcatctcc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018755 |
actaatttgtaatattctaccttaaaaatatgcaaactttcaccaaataaaccaattcatctcc |
3018818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 3018916 - 3019011
Alignment:
| Q |
280 |
tgtatttacaaacataccctcactcaatcatgtacctagtacccatcttggccaaccttgcaatccattccaccattttggttttctcttcaaaat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018916 |
tgtatttacaaacataccctcactcaatcatgtacctagtacccatcttggccaaccttgcaatccattccaccattttggttttctcttcaaaat |
3019011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University