View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_12 (Length: 373)
Name: NF18908_low_12
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_12 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 368
Target Start/End: Complemental strand, 14738024 - 14737671
Alignment:
| Q |
15 |
atatatgtgtaaatctatagatagataataaatttgttcaggtttaagatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctac |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14738024 |
atatatgtgtaaatctatagatagataataaatttgttcaagtttaagatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctac |
14737925 |
T |
|
| Q |
115 |
tactttttatggcccctacatnnnnnnnttcttggatccgccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaa |
214 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14737924 |
tactttttatggcccctacataaaaaaattcttggatccgccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaa |
14737825 |
T |
|
| Q |
215 |
cacctttttgctcttgttactccctagacgtgtctgatagtaacaaggggtcttgagattatacaacaagcattgacaacagcggacgatcccaatgaga |
314 |
Q |
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|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14737824 |
cacctttttgctcttgttactccctaaatgtgtctgatagtaacaaggggtcttgagattatacaacaagcattgacaacagcggacgatcctaatgaga |
14737725 |
T |
|
| Q |
315 |
aaggacttgatcttgttagcaaatatcctattcaaagtaaaggtgatgatgtcc |
368 |
Q |
| |
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||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
14737724 |
aagaacttgatcttgttagcaaatatcttattcaaagtaaaggtgttgatgtcc |
14737671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 356
Target Start/End: Complemental strand, 14744479 - 14744264
Alignment:
| Q |
146 |
ttggatccgccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactcc----ct-a |
240 |
Q |
| |
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|||| ||||||| ||||||||| ||| |||| ||||| ||||||||| ||||| |||||| |||| | |||| |||||||||||||||||| || | |
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| T |
14744479 |
ttggctccgccattaaacttgtt-gaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgctcttgttactcctctcctca |
14744381 |
T |
|
| Q |
241 |
gacgtgtctgatagtaacaaggggtcttgagattatacaacaag-cattgacaacagcggacgatcccaatgagaaaggacttgatcttgttagcaaata |
339 |
Q |
| |
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| |||||| |||||||||||| ||||||||| ||||||||| |||||| | ||||| ||||||||||||| |||| | |||||||||||| | |||| |
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| T |
14744380 |
aatgtgtctattagtaacaagggatcttgagatcatacaacaaaacattgatagcagcgaacgatcccaatgaaaaagaaattgatcttgttatcgaata |
14744281 |
T |
|
| Q |
340 |
tcctattcaaagtaaag |
356 |
Q |
| |
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|| ||||||| |||||| |
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| T |
14744280 |
tcttattcaaggtaaag |
14744264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 19358570 - 19358506
Alignment:
| Q |
60 |
aagatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactactttttat |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
19358570 |
aagatatctgtaaccaacccattgacatgtttctcgctttaacatttcactctactactttttat |
19358506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 10487854 - 10487759
Alignment:
| Q |
220 |
ttttgctcttgttactccctagacgtgtctgatagtaacaaggggtcttgagattatacaacaagcattgacaacagcggacgatcccaatgagaa |
315 |
Q |
| |
|
||||||| ||||||||| |||| |||| |||||||||||||| |||||| |||||||||||| ||||||||||| | | |||||||||||||| |
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|
| T |
10487854 |
ttttgctactgttactccttagagttgtccgatagtaacaagggatcttgatattatacaacaatcattgacaacatcaaatgatcccaatgagaa |
10487759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 19722682 - 19722623
Alignment:
| Q |
64 |
tatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttta |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||| | ||||||||||||||||||| |
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|
| T |
19722682 |
tatgtgtaacgaacccattgacatgtttgtcaatttaaaaattcactctactacttttta |
19722623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 19887137 - 19887192
Alignment:
| Q |
68 |
tgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttta |
123 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||| |||||||||||||||| |
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|
| T |
19887137 |
tgtaaccaacctattgacatgtttcacgctttaacattagactctactacttttta |
19887192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 151 - 368
Target Start/End: Original strand, 17588890 - 17589107
Alignment:
| Q |
151 |
tccgccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactccctagacgtgtctg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | ||||| | |
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|
| T |
17588890 |
tccgccacaaaacttgttagagaaaaatatggttgaaaaaatatttgatgaaaagccgatgcaacacctttttgctcttgttactccctaaatgtgtccg |
17588989 |
T |
|
| Q |
251 |
atagtaacaaggggtcttgagattatacaacaagcattgacaacagcggacgatcccaatgagaaaggacttgatcttgttagcaaatatcctattcaaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
17588990 |
atagtaacaaggggtcttgagattatacaacaagcattgacaacagcgaacgatcccaatgagaaagaacttgatcttgttcgcaaatatcttattcaaa |
17589089 |
T |
|
| Q |
351 |
gtaaaggtgatgatgtcc |
368 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
17589090 |
gtaaaggtgttgatgtcc |
17589107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 17588672 - 17588779
Alignment:
| Q |
15 |
atatatgtgtaaatctatagatagataataaatttgttcaggtttaagatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17588672 |
atatatgtgtaaatctatagatagataataaatttgttcaagtttaagatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctac |
17588771 |
T |
|
| Q |
115 |
tacttttt |
122 |
Q |
| |
|
|||||||| |
|
|
| T |
17588772 |
tacttttt |
17588779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 349
Target Start/End: Original strand, 17582841 - 17583049
Alignment:
| Q |
146 |
ttggatccgccacaaaacttgttagagaaaaatatggttgaaaaaatatatgatgaaaagttgatgcaacacctttttgctcttgttactcc----ct-a |
240 |
Q |
| |
|
|||| ||||||| ||||||||| ||| |||| ||||| ||||||||| ||||| |||||| |||| | | || |||||||||| ||||||| || | |
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|
| T |
17582841 |
ttggctccgccattaaacttgtt-gaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcgcccttttgctcttattactcctctcctca |
17582939 |
T |
|
| Q |
241 |
gacgtgtctgatagtaacaaggggtcttgagattatacaacaag-cattgacaacagcggacgatcccaatgagaaaggacttgatcttgttagcaaata |
339 |
Q |
| |
|
| |||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| | |||||||||||| | |||| |
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|
| T |
17582940 |
aatgtgtctattagtaacaagggatcttgagattatacaacaaaacattgacagcagcgaacgatcccaatgaaaaagaaattgatcttgttatcgaata |
17583039 |
T |
|
| Q |
340 |
tcctattcaa |
349 |
Q |
| |
|
|| ||||||| |
|
|
| T |
17583040 |
tcttattcaa |
17583049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 32578246 - 32578334
Alignment:
| Q |
35 |
atagataataaatttgttcaggtttaa-gatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttt |
122 |
Q |
| |
|
||||||||||||| || ||| || ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32578246 |
atagataataaatctgctcaagtctaaagatatttgtaaccaacccattgacatgtttctagctttaacatttcactctactacttttt |
32578334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 12734226 - 12734287
Alignment:
| Q |
62 |
gatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttta |
123 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
12734226 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactacttttta |
12734287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 8713 - 8653
Alignment:
| Q |
62 |
gatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttt |
122 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8713 |
gatatttgtaacccacccattgacctgtttctcgatttaaaatttcactctactacttttt |
8653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 18912946 - 18913014
Alignment:
| Q |
37 |
agataataaatttgttcaggtttaagatatgtgtaaccaacccattgacatgtttctcactttaacatt |
105 |
Q |
| |
|
||||||||||||||| || || || |||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
18912946 |
agataataaatttgtccaagtcaaatatatttgtaaccaaaccattgacatgtttctcgctttaacatt |
18913014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 18908362 - 18908417
Alignment:
| Q |
68 |
tgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttta |
123 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
18908362 |
tgtaaccaaaccgttgacatgtttcttgctttaacatttcactttactacttttta |
18908417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 18920196 - 18920256
Alignment:
| Q |
35 |
atagataataaatttgttcaggtttaag-atatgtgtaaccaacccattgacatgtttctc |
94 |
Q |
| |
|
||||| ||||||||||| || || |||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
18920196 |
atagacaataaatttgtccaagtctaaggatatttgtaaccaacccattgacatgattctc |
18920256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 14750030 - 14749963
Alignment:
| Q |
35 |
atagataataaatttgttcaggtttaa-gatatgtgtaaccaacccattgacatgtttctcactttaa |
101 |
Q |
| |
|
|||||||||||||||| ||| || ||| |||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
14750030 |
atagataataaatttgctcaagtctaaagatagttgtaaccaacctattgacatgtttctcgctttaa |
14749963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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