View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18908_low_13 (Length: 346)
Name: NF18908_low_13
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 508038 - 508348
Alignment:
| Q |
26 |
cttggaaaaagatattgtctctttgttgatccaatgttggactatcatttaaaggaaaacattcagatgggagagtaattccttttgtgccttggttacc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
508038 |
cttggaaaaagatattgtctctttgttgatccaatgttggactatcatttaaaggaaaacattcagatgggagagtaattccttttgtgccttggttacc |
508137 |
T |
|
| Q |
126 |
aaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaatggtaacaattattcttgatattattaatgattgttgtgtc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
508138 |
aaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaatggtaacaattattcttgatattattaatgattgttgtgtc |
508237 |
T |
|
| Q |
226 |
actctgtttcaaggaaaagtatgccttaaaatatgctgctcgtatggagtactttcacttataaacgaccgcatatatgtggcccttgtttgagatgcgg |
325 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
508238 |
actctgttttaaggaaaagtatgccttaaaatatgctgctcgtatggagtactttcacttataaacgaccgcatatatgtggcccttgtttgagatgcgg |
508337 |
T |
|
| Q |
326 |
acggtgttcat |
336 |
Q |
| |
|
||||||||||| |
|
|
| T |
508338 |
acggtgttcat |
508348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 547772 - 547610
Alignment:
| Q |
26 |
cttggaaaaagatattgtctctttgttgatccaatgttggactatcatttaaaggaaaacattcagatgggagagtaattccttttgtgccttggttacc |
125 |
Q |
| |
|
|||||||||||||| |||||| | ||||| | ||||| ||||| | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
547772 |
cttggaaaaagatactgtctcatggttgaagcgatgttagactaccctttaaaagaaaacattcagatgtgacagtaattccttttgtgctttggttacc |
547673 |
T |
|
| Q |
126 |
aaattattcagtgaattctcaaatcaacgattacttgactagagcttaatacatattaatggt |
188 |
Q |
| |
|
||||||| ||||| || ||| ||||| ||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
547672 |
aaattatatagtgacttttcatatcaattattacttcactagagtctaattcataataatggt |
547610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 547471 - 547376
Alignment:
| Q |
241 |
aaagtatgccttaaaatatgctgctcgtatggagtactttcacttataaacgaccgcatatatgtggcccttgtttgagatgcggacggtgttcat |
336 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| || |||||||| ||||| ||| |||| ||||||| ||| |||||||| ||||||||| |
|
|
| T |
547471 |
aaagtatgccttaaaatatgccgttcgtatggagtacctttgcttataaatgaccgtatagatgtagcccttgcttgtgatgcggatggtgttcat |
547376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University