View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18908_low_15 (Length: 316)

Name: NF18908_low_15
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18908_low_15
NF18908_low_15
[»] chr5 (6 HSPs)
chr5 (1-308)||(38604952-38605259)
chr5 (103-308)||(40180450-40180652)
chr5 (120-270)||(38605684-38605831)
chr5 (140-271)||(40181199-40181330)
chr5 (3-91)||(38605860-38605948)
chr5 (11-91)||(40180712-40180792)
[»] chr6 (3 HSPs)
chr6 (138-306)||(410926-411095)
chr6 (128-183)||(9161361-9161416)
chr6 (3-48)||(410782-410827)
[»] chr8 (7 HSPs)
chr8 (3-306)||(44460157-44460457)
chr8 (3-306)||(44467690-44467990)
chr8 (62-304)||(34502221-34502460)
chr8 (120-273)||(44459572-44459722)
chr8 (120-273)||(44467105-44467255)
chr8 (3-47)||(44459446-44459490)
chr8 (3-47)||(44466979-44467023)
[»] chr1 (1 HSPs)
chr1 (3-306)||(46359027-46359327)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 38605259 - 38604952
Alignment:
Q  1 gcagaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctagattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605259 gcagaatgacatactttttctgtgggacttgcttaaacatattggccattccgagactggtcttcttaacacccagattctcaatcaactcctagattca 38605160  T
Q  101 tttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605159 tttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacac 38605060  T
Q  201 tggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605059 tggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcc 38604960  T
Q  301 tgatgatg 308  Q
    ||||||||    
T  38604959 tgatgatg 38604952  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 308
Target Start/End: Complemental strand, 40180652 - 40180450
Alignment:
Q  103 tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg 202  Q
    ||||||| | |||||| |||| ||| |||||||  | |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  40180652 tggatatatttgggacaaagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactg 40180553  T
Q  203 gaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctg 302  Q
     ||||| ||| |  | | | |  || |||| ||||| | ||||||||||||||||| || ||||||||||| |||||||| ||||| || ||||||||||    
T  40180552 caagctatttgt--ggc-atagattacagtactgatgtactccagcaagccgcttccatatgtcaaaagatggtgcttcaaccagatactctccttcctg 40180456  T
Q  303 atgatg 308  Q
    ||||||    
T  40180455 atgatg 40180450  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 270
Target Start/End: Complemental strand, 38605831 - 38605684
Alignment:
Q  120 aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac 219  Q
    |||| ||| |||||||  ||||||||||||  |||||||||||||| |||||||| ||||||||  |||||  |||||||||  ||||||||||   |||    
T  38605831 aaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gac 38605735  T
Q  220 aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaa 270  Q
     ||||  || |||||||||||  |||| |||||| ||||||||||||||||    
T  38605734 cacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaa 38605684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 40181330 - 40181199
Alignment:
Q  140 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 239  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| |||||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  40181330 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 40181231  T
Q  240 tgctccagcaagccgcttctatctgtcaaaag 271  Q
    || |||| ||||| |  ||||||| |||||||    
T  40181230 tgatccaccaagcagagtctatctatcaaaag 40181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 38605948 - 38605860
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactc 91  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||| | | || || ||||||||| | |  ||||||||||| |||    
T  38605948 agaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacctc 38605860  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 40180792 - 40180712
Alignment:
Q  11 atactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactc 91  Q
    ||||||| ||||||| ||||||| || ||||||||||| | | |||| ||| |||||||||| | ||||||||||||||||    
T  40180792 atactttatctgtggaacttgctgaagcatattggccactatcagaccggtattcttaacactcggattctcaatcaactc 40180712  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 410926 - 411095
Alignment:
Q  138 aagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgc-tg 236  Q
    |||||||||||||||||||||| ||||| ||||| || ||||||||| |||| ||||||||| |||||||||||||||  ||||||||||||||| | |     
T  410926 aagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgcagtacttt 411025  T
Q  237 atatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctgatga 306  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  411026 atatgctccagcaagcggcttctatctgtcaaaagatgctgcttcatccagaaaccctccttcccgatga 411095  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 9161361 - 9161416
Alignment:
Q  128 actgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaaga 183  Q
    ||||||||  ||||||||||| |||||||||||||||| ||||| || ||||||||    
T  9161361 actgcacttgaagtttttcattaatttgaggtctttcaatgtgttccgaatcaaga 9161416  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 410782 - 410827
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggcca 48  Q
    ||||||||||| ||||| |||| ||||||||||| |||||||||||    
T  410782 agaatgacataatttttatgtgagacttgcttaagcatattggcca 410827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 44460157 - 44460457
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctagattcatt 102  Q
    |||| |||||| ||||||||||||| |||||||| ||||||||||| | | ||||||  ||||||| ||||  ||||||||||||||||||| | || ||    
T  44460157 agaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctt 44460256  T
Q  103 tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg 202  Q
    |||||   ||| |  |||||| ||||| | |||| |||||||||||||||||||||  ||||| || ||||| ||||||||| ||||||||  ||| |||    
T  44460257 tggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctg 44460356  T
Q  203 gaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctg 302  Q
     ||||| ||||   ||| ||||  || |   |||||||| |||| |||||||||||||| |||||||||||  ||||||||||||||||| |||||||||    
T  44460357 caagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctg 44460453  T
Q  303 atga 306  Q
    ||||    
T  44460454 atga 44460457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 44467690 - 44467990
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctagattcatt 102  Q
    |||| |||||| ||||||||||||| |||||||| ||||||||||| | | ||||||  ||||||| ||||  ||||||||||||||||||| | || ||    
T  44467690 agaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctt 44467789  T
Q  103 tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg 202  Q
    |||||   ||| |  |||||| ||||| | |||| |||||||||||||||||||||  ||||| || ||||| ||||||||| ||||||||  ||| |||    
T  44467790 tggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctg 44467889  T
Q  203 gaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctg 302  Q
     ||||| ||||   ||| ||||  || |   |||||||| |||| |||||||||||||| |||||||||||  ||||||||||||||||| |||||||||    
T  44467890 caagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctg 44467986  T
Q  303 atga 306  Q
    ||||    
T  44467987 atga 44467990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 34502460 - 34502221
Alignment:
Q  62 cttcttaacacccagattctcaatcaactcctagattcatttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtct 161  Q
    ||||||||||| | ||||||| ||||||||||| ||||  ||| || | ||| ||||||||| |||| ||||| | |||||||||||||||||||||  |    
T  34502460 cttcttaacacacggattctctatcaactcctacattcccttgcatttatgttggaccaaggaaagattgcacccgaagtttttcataaatttgaggcat 34502361  T
Q  162 ttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctat 261  Q
    |||| |||||||| |||| |||| |||| | |||||||||| ||||||||||   ||  ||||| || |   ||||||||  ||| ||||||||||||||    
T  34502360 ttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgatatgacccaccaagccgcttctat 34502264  T
Q  262 ctgtcaaaagattgtgcttcatccagaaaccctccttcctgat 304  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  34502263 ctgtcaaaagatgctgcttcatccagaaaccgtccttcctgat 34502221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 44459572 - 44459722
Alignment:
Q  120 aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac 219  Q
    |||||||  |||||||  ||||||||||||  ||||||| ||||||||||||||| ||||| ||| |||||  |||||| ||| ||||||||||   |||    
T  44459572 aaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gac 44459668  T
Q  220 aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagat 273  Q
     || |  || ||| || ||||| |||| ||||| |||||||||||||| |||||    
T  44459669 cacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagat 44459722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 44467105 - 44467255
Alignment:
Q  120 aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac 219  Q
    |||||||  |||||||  ||||||||||||  ||||||| ||||||||||||||| ||||| ||| |||||  |||||| ||| ||||||||||   |||    
T  44467105 aaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gac 44467201  T
Q  220 aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagat 273  Q
     || |  || ||| || ||||| |||| ||||| |||||||||||||| |||||    
T  44467202 cacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagat 44467255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 44459446 - 44459490
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggcc 47  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||    
T  44459446 agaacgacatactttttctgtgggacttgcttaagcgtattggcc 44459490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 44466979 - 44467023
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggcc 47  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||    
T  44466979 agaacgacatactttttctgtgggacttgcttaagcgtattggcc 44467023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 46359027 - 46359327
Alignment:
Q  3 agaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctagattcatt 102  Q
    |||| |||||| ||||||||||||| |||||||| ||||||||||| | | ||||||  ||||||| ||||  ||||||||||||||||||| | || ||    
T  46359027 agaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctt 46359126  T
Q  103 tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg 202  Q
    |||||   ||| |  |||||| ||||| | |||| |||||||||||||||||||||  ||||| || ||||| ||||||||| ||||||||  ||| |||    
T  46359127 tggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctg 46359226  T
Q  203 gaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctg 302  Q
     ||||| ||||   ||| ||||  || |   |||||||| |||| |||||||||||||| |||||||||||  ||||||||||||||||| |||||||||    
T  46359227 caagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctg 46359323  T
Q  303 atga 306  Q
    ||||    
T  46359324 atga 46359327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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