View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_16 (Length: 314)
Name: NF18908_low_16
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 11549582 - 11549289
Alignment:
| Q |
9 |
cttccgatctcgaaggaaaagcaatcaacccaccagaatcccaaagagaaatggaatttgagtcttgttactggttgggtacatccctcattgtgctgtc |
108 |
Q |
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| T |
11549582 |
cttccgatctcgaaggaaaaacaatcaacccaccagaatcccaaagagaaatggaatctgagtcttgttactggttggatacatccctcattgtgctgtc |
11549483 |
T |
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| Q |
109 |
aagttgaatggtaacccataatacagtgtcgtattggatggtgattcacaacc-aatgtagacgtataaaattctgaaatcatttatattagaatattat |
207 |
Q |
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| T |
11549482 |
aggttgaatggtaacccataatgcagtgtcgtattgcatggtgattcacaacccaatgtagacgtataaaattctgaaatcatttatattagaatattgt |
11549383 |
T |
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| Q |
208 |
cattgcatttaggttgttttgtattgttgaattttgaattaatatgaacatattatatggatttgctttctattactgcatatatgttgttttt |
301 |
Q |
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| T |
11549382 |
cattgcatttaggttgttttgtattgttgaattttgaattaatatgaacatattatatggatttgctttctatttctgcatatatgttgttttt |
11549289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 11443731 - 11443851
Alignment:
| Q |
181 |
ctgaaatcatttatattagaatattatcattgcatttaggttgttttgtattgttgaattttgaattaatatgaacatattatatggatttgctttctat |
280 |
Q |
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| T |
11443731 |
ctgaaatcatttatattagaatattgtcattgcatttaggttgttttgtattgttgaattttgaattaatatgaacatattatatgggtttgctttctat |
11443830 |
T |
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| Q |
281 |
tactgcatatatgttgttttt |
301 |
Q |
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| T |
11443831 |
tactgcatatatgttgttttt |
11443851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 11440839 - 11440967
Alignment:
| Q |
173 |
ataaaattctgaaatcatttatattagaatattatcattgcatttaggttgttttgtattgttgaattttgaattaatatgaacatattatatggatttg |
272 |
Q |
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| T |
11440839 |
ataaaattctgaaatcccttatattagaatattgtcactgtatttaggttgttttgtattgttgaattttgaattgatatgaacatgttatatggatttg |
11440938 |
T |
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| Q |
273 |
ctttctattactgcatatatgttgttttt |
301 |
Q |
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| T |
11440939 |
ctttgtatttcggcatatatattgttttt |
11440967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 11440293 - 11440390
Alignment:
| Q |
58 |
aatggaatttgagtcttgttactggttgggtacatccctcattgtgctgtcaagttgaatggtaacccataatacagtgtcgtattggatggtgattc |
155 |
Q |
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| T |
11440293 |
aatgaaatttgggtcttgttacttgttagatacatccctcattgtggtgtcatgttggatggtgactcataatgcagtgtcatattgaatggtgattc |
11440390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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