View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_17 (Length: 311)
Name: NF18908_low_17
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 6687959 - 6687675
Alignment:
| Q |
11 |
atcatcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaatagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6687959 |
atcatcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaatagg |
6687860 |
T |
|
| Q |
111 |
ttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgtttttattggctcaacttttttccaaggaatgttgaatatatta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6687859 |
ttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgtttttattggctcaactttttcccaaggaatgttgaatatatta |
6687760 |
T |
|
| Q |
211 |
ttgaccagcaattcctctataataaatatatcgttcgatatcaattcctcgagaatgggaaaggaaaagagaaagtcgatgatat |
295 |
Q |
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| T |
6687759 |
ttgaccagcaattcctctataataaatatatcgttcgatatcaattcctcgagaatgggaaaggaaaagagaaagtcgatgatat |
6687675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 37419045 - 37418762
Alignment:
| Q |
14 |
atcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttc |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
37419045 |
atcatattgtgatttgttttgtaaaatgaaacaaactagtactgaccatctttatactgagactgactgcactggaaagcaagaagagaggaataggttc |
37418946 |
T |
|
| Q |
114 |
gttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgtttttattggctcaacttttttccaaggaatgttgaatatattattg |
213 |
Q |
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| T |
37418945 |
gctatcataaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgcttttattggaacagcattattataagtaaggttaaatggatgattt |
37418846 |
T |
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| Q |
214 |
accagcaattcctctataataaatatatcgttcgata---tcaattcctcgagaatgggaaaggaaaagagaaagtcgatgata |
294 |
Q |
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|| | | ||||||||||||||||| ||| || || ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
37418845 |
actaacgtttcctctataataaatagatcattatttacccgcaattcctctagaatgggaaaggaaaagagaaagtcaatgata |
37418762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 53068969 - 53068814
Alignment:
| Q |
11 |
atcatcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaatagg |
110 |
Q |
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||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
53068969 |
atcatgatattgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgctctggaaagcaggaagagaggaatagg |
53068870 |
T |
|
| Q |
111 |
ttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
166 |
Q |
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|| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53068869 |
tttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctg |
53068814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 53059743 - 53059588
Alignment:
| Q |
11 |
atcatcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaatagg |
110 |
Q |
| |
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||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
53059743 |
atcatgatattgtgaattgttttgtaaaatgaaacaaactcttacttaccagagttatactgagactccgtgccctggaaagcaggaagagaggaatagg |
53059644 |
T |
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| Q |
111 |
ttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
166 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53059643 |
tttgttatcagaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
53059588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 53062772 - 53062666
Alignment:
| Q |
58 |
accatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttga |
157 |
Q |
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|||| ||||| ||||||||| ||||||||||||||||||||| |||||||| || | ||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
53062772 |
accagctttatactgagactctgtgccttggaaagcaagaagaaaggaatagctttgctatcagaaagcttggctgtcactaaattgggcaagtgtttga |
53062673 |
T |
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| Q |
158 |
tcttgtc |
164 |
Q |
| |
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||||||| |
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| T |
53062672 |
tcttgtc |
53062666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 53059535 - 53059494
Alignment:
| Q |
252 |
caattcctcgagaatgggaaaggaaaagagaaagtcgatgat |
293 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||| |
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| T |
53059535 |
caattcctccagaatgggaaagaacaagagaaagtcgatgat |
53059494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 34036186 - 34036034
Alignment:
| Q |
14 |
atcatattgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttc |
113 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||||||| ||||| ||||| |||||| || ||||||||||||||||||| |||||||||| || |
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| T |
34036186 |
atcatattgtaatttgttttgcaaaatcaaacaaactcttaaataccagctttatactgagccttcgtgccttggaaagcaagaaaagaggaatagcttt |
34036087 |
T |
|
| Q |
114 |
gttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
166 |
Q |
| |
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| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34036086 |
gctactagaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
34036034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 31014328 - 31014240
Alignment:
| Q |
19 |
attgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||| ||||||||| |
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| T |
31014328 |
attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcct-tgtgccttggaaagcaagaaaagaggaata |
31014240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 31014221 - 31014179
Alignment:
| Q |
251 |
tcaattcctcgagaatgggaaaggaaaagagaaagtcgatgat |
293 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
31014221 |
tcaattcctctagaatgggaaaggacaagagaaagtcgatgat |
31014179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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