View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_19 (Length: 296)
Name: NF18908_low_19
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 48962981 - 48963279
Alignment:
| Q |
1 |
tttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccagg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48962981 |
tttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccatg |
48963080 |
T |
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| Q |
101 |
ggtatata-----ggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga |
195 |
Q |
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| T |
48963081 |
ggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga |
48963180 |
T |
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| Q |
196 |
ggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagagggga |
295 |
Q |
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| T |
48963181 |
ggtggcgatgtcagtggtggaggacaaagattcaacaccatcaaggaggctg--ttgtttggaggggaagtcgatggtatgaaggcgaaggaagagggga |
48963278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 48958840 - 48959140
Alignment:
| Q |
1 |
tttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccagg |
100 |
Q |
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| T |
48958840 |
tttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaacccagg |
48958939 |
T |
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| Q |
101 |
ggtatat--ag---gtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga |
195 |
Q |
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| T |
48958940 |
ggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgccccgtagtatatcttgccgga |
48959039 |
T |
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| Q |
196 |
ggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagagggga |
295 |
Q |
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| T |
48959040 |
ggtgtcaccgtcggaggtggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaaggga |
48959139 |
T |
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| Q |
296 |
t |
296 |
Q |
| |
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| T |
48959140 |
t |
48959140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 48966151 - 48966206
Alignment:
| Q |
119 |
cagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc |
174 |
Q |
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| T |
48966151 |
cagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgc |
48966206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 12589654 - 12589372
Alignment:
| Q |
5 |
ttctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccaggggta |
104 |
Q |
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||||||||||||| | || ||||| ||||| | ||||||| | |||||||| | | ||||||| ||||||||||| ||| ||||||||||| ||||| |
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| T |
12589654 |
ttctaagggattccaaaagagagactgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatgtcataaacccctgggta |
12589555 |
T |
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| Q |
105 |
tata-----ggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgcc-gtagtatatcttggctgaggt |
198 |
Q |
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| T |
12589554 |
tatgcaatcggcaatgatgtagtcaggtggatccttctgcatcaaatccccaatgggttcaaggaggagctttgcggctgta-tagatcttgatggaggt |
12589456 |
T |
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| Q |
199 |
ggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcg |
282 |
Q |
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| T |
12589455 |
ggcgtggtcggtggtggaggacaaagattcgacaccgtcagggaggccgacttgtagggaggggaaatctacgatgtgaaggcg |
12589372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 12640967 - 12640675
Alignment:
| Q |
1 |
tttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccagg |
100 |
Q |
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|||||||| | ||||||||||||||| || ||||| | | |||| |||||||||||||||| ||| ||| |||||| ||||||||| || ||| | |
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| T |
12640967 |
tttattcttaaggattctatgagggatactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaag |
12640868 |
T |
|
| Q |
101 |
ggtatata-----ggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga |
195 |
Q |
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|||||| | || | |||| |||||||| |||||||||||| ||| || ||| ||| | |||||||||||||| || | |||||||||| |
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| T |
12640867 |
ggtatacacagtcggcaatgatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccat |
12640768 |
T |
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| Q |
196 |
ggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaa |
288 |
Q |
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| T |
12640767 |
ggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaa |
12640675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 13449284 - 13449354
Alignment:
| Q |
218 |
gacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaa |
288 |
Q |
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|||| |||||||| || ||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |
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| T |
13449284 |
gacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaa |
13449354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 290
Target Start/End: Original strand, 13441028 - 13441193
Alignment:
| Q |
125 |
ggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaag |
224 |
Q |
| |
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| T |
13441028 |
ggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatag |
13441127 |
T |
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| Q |
225 |
attcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaaga |
290 |
Q |
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| T |
13441128 |
attcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaaga |
13441193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 13462224 - 13462264
Alignment:
| Q |
137 |
tccatgaaatcctgaattggtccgtggaggagcattgcgcc |
177 |
Q |
| |
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| T |
13462224 |
tccatgaaatcctcaatgggtccatggaggagcattgcgcc |
13462264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 12541593 - 12541668
Alignment:
| Q |
205 |
gtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaagg |
280 |
Q |
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| T |
12541593 |
gtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg |
12541668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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