View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_2 (Length: 794)
Name: NF18908_low_2
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 597
Target Start/End: Complemental strand, 35448569 - 35447991
Alignment:
| Q |
19 |
gtatgtcctctctcttgtgtttctgtgggtcaatgtgcgcgtttaaataaaatgttcaaagcttattttggattaatcataaccagtactgattctcatc |
118 |
Q |
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| T |
35448569 |
gtatgtcctctctcttgtgtttctgtgggtcaatgtgcatgtttaaataaaatgttcaaagcttagtttggattaatcataaccagtactgattctcatc |
35448470 |
T |
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| Q |
119 |
tccttgtttaacaggtgaacctgacgacgatccttttggtctttataacattcctgaaactcctgatatgctgacttccaaagtcaatagttgacggtct |
218 |
Q |
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| T |
35448469 |
tccttgtttaacaggtgaacctgacgacgatccttttggtctttataacattcctgaaactcctgatatgctgacttctaaagtcaatagttgacggtct |
35448370 |
T |
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| Q |
219 |
ttgatcatcattaacttaggtatgttctttacttctattgttaggaccaaattaggaagccacttgcatgatatatgtgttgctatggttcttctattat |
318 |
Q |
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| T |
35448369 |
ttgatcatcattaacttaggtatgttctttacttctattgttaggaccaaattaggaagccacttgcatgatatatgtgttgctatggttcttctattat |
35448270 |
T |
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| Q |
319 |
tactatagcatggtttgtagctttggtaacttgtattggtataatcatgtagagtgcaatttaagctacctgagtttttaattagtttttactacatgaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
35448269 |
tactatagcatggtttgtagctttggtaacttgtattggtataatcatgtagagtgcaatttaagctacgtgagtttttaattagtttttactacatgca |
35448170 |
T |
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| Q |
419 |
cgaannnnnnnaattgtttatcttggctgcaggtttaacaaaatgctagaacagtgttgtacataaaaccataactcatggatgaacacatgctttgata |
518 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448169 |
cgaatttttttaattgtttatcttggctgcaggtttaacaaaatgctagaacagtgttgtacataaaaccataactcatggatgaacacatgctttgata |
35448070 |
T |
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| Q |
519 |
ttttaatagtttgctacctccaagtgaagacaatgtaatttgaacacttccgtgtgatggtgtagatgattatgggata |
597 |
Q |
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| T |
35448069 |
ttttaatagtttgctacctccaagtgaagacaatgtaatttgaacacttccgtgtgatggtgtaggtgattatgggata |
35447991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 698 - 794
Target Start/End: Complemental strand, 35447890 - 35447794
Alignment:
| Q |
698 |
tccatattccataactttattagtatagtactcaaaatctaatcatttgatgtcatgtttctttatatatattatccatcaaagtattctcctttac |
794 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35447890 |
tccatattccataactttattagtatagtactcaaaatctaatcatttgatgtcatgttactttatatatattatccatcaaagtattctcctttac |
35447794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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