View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18908_low_22 (Length: 221)

Name: NF18908_low_22
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18908_low_22
NF18908_low_22
[»] chr2 (9 HSPs)
chr2 (1-122)||(3832199-3832320)
chr2 (151-205)||(3832147-3832201)
chr2 (1-50)||(2265349-2265398)
chr2 (1-50)||(45442648-45442697)
chr2 (1-51)||(29865463-29865513)
chr2 (1-50)||(25954114-25954163)
chr2 (1-50)||(29182167-29182216)
chr2 (1-50)||(41693673-41693722)
chr2 (1-50)||(43672270-43672319)
[»] chr5 (10 HSPs)
chr5 (1-53)||(42207238-42207290)
chr5 (1-51)||(10744006-10744056)
chr5 (1-51)||(14318043-14318093)
chr5 (1-51)||(23381948-23381998)
chr5 (1-50)||(9179592-9179641)
chr5 (1-50)||(29693042-29693091)
chr5 (1-50)||(38496734-38496783)
chr5 (1-50)||(40029140-40029189)
chr5 (1-49)||(21050575-21050623)
chr5 (1-49)||(38962806-38962854)
[»] chr7 (7 HSPs)
chr7 (1-50)||(6911081-6911130)
chr7 (1-51)||(30709596-30709646)
chr7 (1-50)||(44958458-44958507)
chr7 (1-49)||(1974009-1974057)
chr7 (1-49)||(21223405-21223453)
chr7 (1-49)||(32189076-32189124)
chr7 (1-49)||(44403201-44403249)
[»] chr3 (3 HSPs)
chr3 (1-49)||(275785-275833)
chr3 (1-51)||(45313498-45313548)
chr3 (1-51)||(46622081-46622131)
[»] chr8 (8 HSPs)
chr8 (1-48)||(30969399-30969446)
chr8 (1-51)||(28398987-28399037)
chr8 (1-51)||(32040073-32040123)
chr8 (1-50)||(9175011-9175060)
chr8 (1-50)||(24187849-24187898)
chr8 (1-50)||(38930301-38930350)
chr8 (1-53)||(8094793-8094845)
chr8 (1-49)||(29487750-29487798)
[»] chr4 (8 HSPs)
chr4 (2-49)||(9446276-9446323)
chr4 (1-52)||(28448831-28448882)
chr4 (1-51)||(22584285-22584335)
chr4 (1-50)||(13764759-13764808)
chr4 (1-50)||(52442044-52442093)
chr4 (1-49)||(25358492-25358540)
chr4 (1-49)||(28809011-28809059)
chr4 (1-57)||(35415291-35415347)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-51)||(10467-10517)
[»] chr6 (3 HSPs)
chr6 (1-51)||(543676-543726)
chr6 (1-50)||(11448536-11448585)
chr6 (1-50)||(25431575-25431624)
[»] chr1 (3 HSPs)
chr1 (1-46)||(20756022-20756067)
chr1 (2-51)||(33067346-33067395)
chr1 (1-49)||(34383196-34383244)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3832320 - 3832199
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcctagattttaagcatcctgttccgtaatttgaaacctcgtctaatccattct 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  3832320 taaaaccaaaaccaaacatatttacaagaactaaaatcatattttagcctagattttatgcatcctgtttcgtaatttgaaacctcgtctaatccattct 3832221  T
Q  101 cgttcttataataaacataata 122  Q
    ||||||||||||||||||||||    
T  3832220 cgttcttataataaacataata 3832199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 3832201 - 3832147
Alignment:
Q  151 atagtatttcaacgttttgcacctgacaagtcacaactagtactgaaataatatc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3832201 atagtatttcaacgttttgcacctgacaagtcacaactagtactgaaataatatc 3832147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2265349 - 2265398
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  2265349 taaaaccaaaacgagacatatttgcaaggactaaaatcatattttagcct 2265398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45442648 - 45442697
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  45442648 taaaaccaaaacgagacatatttgcaaggactaaaatcatattttagcct 45442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29865463 - 29865513
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| || |||||||  ||||||||||| ||||||||||||||    
T  29865463 taaaaccaaaacgaagcatatttgcaaggactaaaaccatattttagccta 29865513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25954163 - 25954114
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| ||||||||||  | ||||||||| |||||||||||||    
T  25954163 taaaaccaaaacgaaacatatttgcagggactaaaaacatattttagcct 25954114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29182216 - 29182167
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||  ||||||||||  |||||| ||||||||||||||||||    
T  29182216 taaaaccaaaatgaaacatatttgcaaggaccaaaatcatattttagcct 29182167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41693722 - 41693673
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| ||||||||||  | ||||||||| |||||||||||||    
T  41693722 taaaaccaaaacgaaacatatttgcagggactaaaaccatattttagcct 41693673  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43672270 - 43672319
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| ||||||||||  | |||| ||||||||||||||||||    
T  43672270 taaaaccaaaacaaaacatatttgcagggaccaaaatcatattttagcct 43672319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42207290 - 42207238
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcctaga 53  Q
    |||||||||||| | ||||||||| ||||||||||| ||||||||||||||||    
T  42207290 taaaaccaaaacgagacatatttacaaggactaaaaccatattttagcctaga 42207238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10744006 - 10744056
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||||    
T  10744006 taaaaccaaaacgagacatatttgcaaggactaaaaccatattttagccta 10744056  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14318093 - 14318043
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||||    
T  14318093 taaaaccaaaacgagacatatttgcaaggactaaaaccatattttagccta 14318043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23381998 - 23381948
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||||| ||||||||  | ||||||||| ||||||||||||||    
T  23381998 taaaaccaaaaccagacatatttgcagggactaaaaccatattttagccta 23381948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9179641 - 9179592
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| || |||||||  ||||||||||| |||||||||||||    
T  9179641 taaaaccaaaacgaatcatatttgcaaggactaaaaccatattttagcct 9179592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29693042 - 29693091
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| || |||||||  | |||||||||||||||||||||||    
T  29693042 taaaaccaaaacgaagcatatttgcagggactaaaatcatattttagcct 29693091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38496734 - 38496783
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| ||||||||||  | ||||||||| |||||||||||||    
T  38496734 taaaaccaaaacgaaacatatttgcagggactaaaaccatattttagcct 38496783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40029189 - 40029140
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||| | ||||||||| |||||||||||||    
T  40029189 taaaaccaaaacgagacatatttacagggactaaaaccatattttagcct 40029140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21050623 - 21050575
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    ||||| |||||| || ||||||| || ||||||||||||||||||||||    
T  21050623 taaaatcaaaacgaagcatatttgtagggactaaaatcatattttagcc 21050575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38962854 - 38962806
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| | ||||||||| | ||||||||| ||||||||||||    
T  38962854 taaaaccaaaacgagacatatttacagggactaaaaccatattttagcc 38962806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6911130 - 6911081
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  6911130 taaaatcaaaacgagacatatttataaggaccaaaatcatattttagcct 6911081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30709596 - 30709646
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| | ||||||||  | ||||||||||||||||||||||||    
T  30709596 taaaaccaaaacgagacatatttgcagggactaaaatcatattttagccta 30709646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44958458 - 44958507
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | |||||||| || |||| ||||||||||||||||||    
T  44958458 taaaaccaaaacgagacatatttgtagggaccaaaatcatattttagcct 44958507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1974057 - 1974009
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| ||||||||||  | ||||||||| ||||||||||||    
T  1974057 taaaaccaaaacgaaacatatttgcagggactaaaaccatattttagcc 1974009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21223453 - 21223405
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| || |||||||  | ||||||||||||||||||||||    
T  21223453 taaaaccaaaacgaagcatatttgcagggactaaaatcatattttagcc 21223405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32189124 - 32189076
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| || |||||||  | ||||||||||||||||||||||    
T  32189124 taaaaccaaaacgaagcatatttgcagggactaaaatcatattttagcc 32189076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44403201 - 44403249
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||    
T  44403201 taaaaccaaaacgagacatatttgcaaggactaaaaccatattttagcc 44403249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 275785 - 275833
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| || |||||||| | ||||||||||||||||||||||    
T  275785 taaaaccaaaacgaagcatatttacagggactaaaatcatattttagcc 275833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45313548 - 45313498
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    ||||| |||||| || |||||||| |||||| |||||||||||||||||||    
T  45313548 taaaatcaaaacgaatcatatttacaaggaccaaaatcatattttagccta 45313498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46622081 - 46622131
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| ||||||||||  |||||| |||| ||||||||||||||    
T  46622081 taaaaccaaaacgaaacatatttgcaaggaccaaaaccatattttagccta 46622131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30969446 - 30969399
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagc 48  Q
    |||||||||||| |||||||||| ||||||| |||| |||||||||||    
T  30969446 taaaaccaaaacgaaacatatttgtaaggaccaaaaccatattttagc 30969399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28398987 - 28399037
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| || |||||||  | ||||||||||||||||||||||||    
T  28398987 taaaaccaaaacgaaccatatttgcagggactaaaatcatattttagccta 28399037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32040123 - 32040073
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| ||||||||||  | ||||||| ||||||||||||||||    
T  32040123 taaaaccaaaacgaaacatatttgcagggactaagatcatattttagccta 32040073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9175060 - 9175011
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  |||||| ||||||||||||||||||    
T  9175060 taaaaccaaaacgagacatatttgcaaggaccaaaatcatattttagcct 9175011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24187849 - 24187898
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  | |||||||||||||||||||||||    
T  24187849 taaaaccaaaacgagacatatttgcagggactaaaatcatattttagcct 24187898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38930350 - 38930301
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||| | ||||||||| |||||||||||||    
T  38930350 taaaaccaaaacgagacatatttacagggactaaaaccatattttagcct 38930301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8094793 - 8094845
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcctaga 53  Q
    |||||||||||| |  |||||||  ||||||||||| ||||||||||||||||    
T  8094793 taaaaccaaaacgaggcatatttgcaaggactaaaaccatattttagcctaga 8094845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29487798 - 29487750
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| ||||||||||  | |||| |||||||||||||||||    
T  29487798 taaaaccaaaacgaaacatatttgcagggacgaaaatcatattttagcc 29487750  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 9446276 - 9446323
Alignment:
Q  2 aaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    ||||||||||| | ||||||||| | ||||||||||||||||||||||    
T  9446276 aaaaccaaaacgagacatatttacagggactaaaatcatattttagcc 9446323  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28448882 - 28448831
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcctag 52  Q
    |||||||||||| |  ||||||| |||||||||||| |||||||||||||||    
T  28448882 taaaaccaaaacgaggcatatttgtaaggactaaaaccatattttagcctag 28448831  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22584335 - 22584285
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||||    
T  22584335 taaaaccaaaacgagacatatttgcaaggactaaaaccatattttagccta 22584285  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13764759 - 13764808
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| ||||||||||| | |||| |||| |||||||||||||    
T  13764759 taaaaccaaaacgaaacatatttacagggaccaaaaccatattttagcct 13764808  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 52442044 - 52442093
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  ||||||||||| |||||||||||||    
T  52442044 taaaaccaaaacgagacatatttgcaaggactaaaaccatattttagcct 52442093  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25358492 - 25358540
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| | ||||||||| | |||| |||||||||||||||||    
T  25358492 taaaaccaaaacgagacatatttacagggaccaaaatcatattttagcc 25358540  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28809059 - 28809011
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||    
T  28809059 taaaaccaaaacgatacatatttgcaaggactaaaaccatattttagcc 28809011  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35415347 - 35415291
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcctagatttt 57  Q
    |||||||||||| |  |||||||| | ||||||||| |||||||||||||| |||||    
T  35415347 taaaaccaaaacgatgcatatttacagggactaaaaccatattttagcctatatttt 35415291  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10467 - 10517
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||||| ||||||||  | ||||||||| ||||||||||||||    
T  10467 taaaaccaaaaccagacatatttgcagggactaaaaccatattttagccta 10517  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 543676 - 543726
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    |||||||||||| || |||||||  | ||||||||||||||||||||||||    
T  543676 taaaaccaaaacaaagcatatttgcagggactaaaatcatattttagccta 543726  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11448585 - 11448536
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    |||||||||||| | ||||||||  | |||||||||||||||||||||||    
T  11448585 taaaaccaaaacgagacatatttgcagggactaaaatcatattttagcct 11448536  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25431624 - 25431575
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcct 50  Q
    ||||| |||||| ||||||||||| | ||| |||||||||||||||||||    
T  25431624 taaaatcaaaacgaaacatatttacagggattaaaatcatattttagcct 25431575  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20756067 - 20756022
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatatttta 46  Q
    |||||||||||| | ||||||||| ||||| |||||||||||||||    
T  20756067 taaaaccaaaacgagacatatttacaaggattaaaatcatatttta 20756022  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 33067395 - 33067346
Alignment:
Q  2 aaaaccaaaaccaaacatatttataaggactaaaatcatattttagccta 51  Q
    ||||||||||| | ||||||||  ||||||||||| ||||||||||||||    
T  33067395 aaaaccaaaacgagacatatttgcaaggactaaaaccatattttagccta 33067346  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34383196 - 34383244
Alignment:
Q  1 taaaaccaaaaccaaacatatttataaggactaaaatcatattttagcc 49  Q
    |||||||||||| | ||||||||| | | ||||||||||||||||||||    
T  34383196 taaaaccaaaacaatacatatttacaggaactaaaatcatattttagcc 34383244  T

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