View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18908_low_5 (Length: 504)

Name: NF18908_low_5
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18908_low_5
NF18908_low_5
[»] chr2 (20 HSPs)
chr2 (18-480)||(9564554-9565025)
chr2 (258-475)||(9573671-9573894)
chr2 (53-130)||(1962877-1962953)
chr2 (54-130)||(29090467-29090543)
chr2 (53-104)||(18424145-18424196)
chr2 (69-104)||(19843356-19843391)
chr2 (54-103)||(3330195-3330244)
chr2 (53-130)||(33065224-33065301)
chr2 (63-104)||(34107555-34107596)
chr2 (54-103)||(42678318-42678367)
chr2 (69-104)||(6270498-6270533)
chr2 (73-116)||(37886206-37886249)
chr2 (73-104)||(41750017-41750048)
chr2 (63-121)||(6866569-6866627)
chr2 (73-103)||(20375664-20375694)
chr2 (73-103)||(20435852-20435882)
chr2 (73-103)||(35710165-35710195)
chr2 (76-125)||(43027229-43027278)
chr2 (70-98)||(3402698-3402726)
chr2 (73-121)||(37592198-37592246)
[»] chr5 (15 HSPs)
chr5 (53-106)||(42208967-42209020)
chr5 (53-130)||(38503224-38503301)
chr5 (53-104)||(31250198-31250249)
chr5 (53-104)||(43227917-43227968)
chr5 (72-130)||(16965815-16965873)
chr5 (73-130)||(930905-930962)
chr5 (76-121)||(3294157-3294202)
chr5 (53-121)||(5039731-5039799)
chr5 (75-130)||(33545354-33545409)
chr5 (76-104)||(4395844-4395872)
chr5 (64-104)||(12375400-12375439)
chr5 (76-104)||(15470614-15470642)
chr5 (64-104)||(15696274-15696313)
chr5 (70-98)||(17087163-17087191)
chr5 (63-103)||(34729532-34729572)
[»] chr4 (23 HSPs)
chr4 (53-130)||(46283173-46283250)
chr4 (20-100)||(48404134-48404214)
chr4 (73-130)||(56555619-56555676)
chr4 (54-125)||(11491191-11491262)
chr4 (53-116)||(21200581-21200643)
chr4 (53-104)||(40406953-40407004)
chr4 (53-102)||(22096386-22096435)
chr4 (68-104)||(43084513-43084549)
chr4 (73-104)||(2931135-2931166)
chr4 (73-104)||(16556522-16556553)
chr4 (66-101)||(25104391-25104426)
chr4 (53-104)||(37889599-37889650)
chr4 (53-104)||(42154617-42154668)
chr4 (53-100)||(43362165-43362212)
chr4 (73-104)||(45355711-45355742)
chr4 (73-104)||(45369452-45369483)
chr4 (53-100)||(45847923-45847970)
chr4 (73-116)||(49607621-49607664)
chr4 (63-104)||(36993102-36993143)
chr4 (73-130)||(37574343-37574400)
chr4 (53-130)||(38690717-38690794)
chr4 (64-104)||(13210152-13210191)
chr4 (53-125)||(50815758-50815830)
[»] chr6 (14 HSPs)
chr6 (53-130)||(5641657-5641734)
chr6 (54-104)||(17217010-17217060)
chr6 (53-130)||(6228227-6228304)
chr6 (53-130)||(18903334-18903411)
chr6 (69-104)||(5948938-5948973)
chr6 (53-104)||(20415555-20415606)
chr6 (53-132)||(32344690-32344769)
chr6 (73-125)||(7164765-7164817)
chr6 (80-130)||(1128383-1128433)
chr6 (73-103)||(3974512-3974542)
chr6 (53-103)||(4854300-4854350)
chr6 (76-104)||(3200076-3200104)
chr6 (64-104)||(15717001-15717040)
chr6 (73-121)||(29321952-29322000)
[»] chr3 (29 HSPs)
chr3 (53-130)||(11483664-11483741)
chr3 (53-130)||(39739325-39739402)
chr3 (53-130)||(29645794-29645871)
chr3 (53-130)||(47864687-47864764)
chr3 (73-125)||(38668199-38668251)
chr3 (18-121)||(27471520-27471623)
chr3 (63-130)||(50381775-50381842)
chr3 (73-130)||(1102663-1102720)
chr3 (73-130)||(22602170-22602227)
chr3 (66-103)||(24651188-24651225)
chr3 (73-130)||(31435468-31435525)
chr3 (63-130)||(30693289-30693354)
chr3 (73-125)||(33528177-33528229)
chr3 (69-121)||(34225264-34225316)
chr3 (63-130)||(8930944-8931011)
chr3 (63-130)||(27394568-27394635)
chr3 (73-132)||(40412338-40412397)
chr3 (53-104)||(49429511-49429562)
chr3 (73-131)||(9738427-9738485)
chr3 (73-103)||(29226397-29226427)
chr3 (53-103)||(50688891-50688941)
chr3 (20-130)||(54457171-54457281)
chr3 (63-104)||(985912-985953)
chr3 (73-122)||(43897673-43897722)
chr3 (53-130)||(45431678-45431755)
chr3 (64-104)||(30162724-30162763)
chr3 (64-104)||(36590458-36590497)
chr3 (73-121)||(44062018-44062066)
chr3 (73-121)||(50271800-50271848)
[»] chr1 (29 HSPs)
chr1 (53-130)||(7438672-7438749)
chr1 (53-130)||(19424097-19424174)
chr1 (53-130)||(43109205-43109282)
chr1 (53-104)||(16985928-16985979)
chr1 (53-104)||(24134617-24134668)
chr1 (53-104)||(25031490-25031541)
chr1 (69-104)||(27054763-27054798)
chr1 (73-116)||(35309795-35309838)
chr1 (53-104)||(40061494-40061545)
chr1 (64-130)||(15417784-15417850)
chr1 (63-125)||(42946439-42946501)
chr1 (73-106)||(3347694-3347727)
chr1 (63-124)||(29332345-29332406)
chr1 (53-130)||(34702280-34702357)
chr1 (54-130)||(29936648-29936724)
chr1 (62-102)||(35308469-35308509)
chr1 (64-104)||(50065072-50065112)
chr1 (73-104)||(10123046-10123077)
chr1 (53-104)||(14262714-14262765)
chr1 (73-104)||(50011578-50011609)
chr1 (18-104)||(4684170-4684256)
chr1 (63-125)||(49620033-49620095)
chr1 (74-104)||(50302844-50302874)
chr1 (73-102)||(12148568-12148597)
chr1 (71-100)||(15550938-15550967)
chr1 (63-104)||(49239840-49239881)
chr1 (73-101)||(8893931-8893959)
chr1 (60-132)||(12973243-12973315)
chr1 (73-125)||(35195583-35195635)
[»] chr8 (18 HSPs)
chr8 (18-110)||(10201278-10201370)
chr8 (73-130)||(43413853-43413910)
chr8 (76-116)||(279978-280018)
chr8 (76-116)||(635834-635874)
chr8 (76-116)||(821637-821677)
chr8 (73-104)||(1032641-1032672)
chr8 (73-104)||(4259930-4259961)
chr8 (73-104)||(11052577-11052608)
chr8 (53-104)||(19957314-19957365)
chr8 (73-104)||(38289228-38289259)
chr8 (53-104)||(41454820-41454871)
chr8 (73-103)||(38064048-38064078)
chr8 (73-130)||(44828399-44828457)
chr8 (64-101)||(3728224-3728261)
chr8 (73-130)||(39104677-39104734)
chr8 (70-103)||(44010421-44010454)
chr8 (64-104)||(13906614-13906653)
chr8 (69-121)||(38402735-38402786)
[»] scaffold0001 (1 HSPs)
scaffold0001 (53-104)||(419763-419814)
[»] chr7 (23 HSPs)
chr7 (53-124)||(14707343-14707414)
chr7 (53-104)||(40273872-40273923)
chr7 (63-130)||(48433677-48433744)
chr7 (63-109)||(20529957-20530003)
chr7 (54-123)||(23602326-23602395)
chr7 (25-102)||(25770037-25770114)
chr7 (25-102)||(25775608-25775685)
chr7 (73-125)||(4956064-4956116)
chr7 (73-125)||(5228141-5228193)
chr7 (71-103)||(18128899-18128931)
chr7 (53-125)||(33248774-33248846)
chr7 (63-103)||(37918741-37918781)
chr7 (73-104)||(12166153-12166184)
chr7 (53-104)||(31793519-31793570)
chr7 (73-104)||(43440760-43440791)
chr7 (73-104)||(48619867-48619898)
chr7 (53-103)||(3889794-3889844)
chr7 (74-104)||(23824585-23824615)
chr7 (76-130)||(24030059-24030112)
chr7 (65-106)||(28712430-28712471)
chr7 (54-103)||(46243343-46243392)
chr7 (72-104)||(33413902-33413934)
chr7 (63-103)||(38378280-38378320)
[»] scaffold0339 (1 HSPs)
scaffold0339 (70-104)||(12655-12689)
[»] scaffold0108 (1 HSPs)
scaffold0108 (70-104)||(18339-18373)
[»] scaffold0072 (1 HSPs)
scaffold0072 (69-103)||(17727-17761)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 9564554 - 9565025
Alignment:
Q  18 ggtaagagataatgtataatatatataagaggt-gtggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9564554 ggtaagagataatgtataatatatgtaaggggttgtggttcgtaccctggacacctcacttattcacctttaaagtgaatttctctagtcgttaggctac 9564653  T
Q  117 atgaccaaacaaaatagggtannnnnnnnnctattctttgtnnnnnnnn-----tggtacttcattcttattcttttatttaggagccaatctattctta 211  Q
    ||||||| | |||||||||||         |||||||||||             ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9564654 atgaccata-aaaatagggtacttttttttctattctttgtaaataaaaaaaaatggtacttcattcttattcttttatttaggacccaatctattctta 9564752  T
Q  212 ttaaaaatgtatgataaaatttacttttccnnnnnnnnnnnnnnnncatctttgacgtaacttatttattaattaggaattttatcttatacagaaattt 311  Q
    ||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9564753 ttaaaaatgtatgataaaatttacttttccttttttttttttt---catctttgacgtaacttatttattaattaggaattttatcttatacagaaattt 9564849  T
Q  312 gtgttttttacgtaataatgtatacaataataaattggttaattagaaattgtagattgatataatacatgtaggtcacccnnnnnnnnttacatgcata 411  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||         ||||| |||||    
T  9564850 gtgttttttacgtaataatgtatacaataataaactggttcatcagaaattgtagattgatataatacatgtaggtcaccaaaaaaaaattacacgcata 9564949  T
Q  412 tgtacataggatggatatttcaactaaatcattt-------aaaaaaaaagcaattagcgttagtaaatgtaagag 480  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  9564950 tgtacataggatggatatttcaactaaatcatttaaaaaaaaaaaaaaaagcaattagcgttagtaaatgtaagag 9565025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 258 - 475
Target Start/End: Original strand, 9573671 - 9573894
Alignment:
Q  258 catctttgacgtaacttatttattaattaggaattttatcttatacagaaatttgtgttttttacgtaataatgtatacaataataaattggttaattag 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  9573671 catctttgacgtaacttatttattaattaggaattttatcttatacagatatttgtgttttttacgcaataatgtatacgataataaactggttaattag 9573770  T
Q  358 aaattgtagattgatataatacatgtaggtcacccnnnnnnnnttacatgcatatgtacataggatggatatttcaactaaatcattt------aaaaaa 451  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||       ||| |    
T  9573771 aaattgtagattgatataatacatgtaggtcacccaaaaaaaattacatgcatatgtacataggatgtatatttcaactaaatcattttttcaacaaaga 9573870  T
Q  452 aaagcaattagcgttagtaaatgt 475  Q
    ||||||||||||||||||||||||    
T  9573871 aaagcaattagcgttagtaaatgt 9573894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 1962877 - 1962953
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||| |||| |||| ||| ||||    
T  1962877 ggttcgaactccggacaccccacttattcatctttaaggtgaa-ttctctagtcgctaggctacttgacaaaagaaaa 1962953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 29090467 - 29090543
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||| || || ||| |||| |||| ||| ||||    
T  29090467 gttcgaaccccggacacctcacttattcatctttaaggtgaatttctccagccgctaggctacttgacaaaaaaaaa 29090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 18424196 - 18424145
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| |||||||| | | ||||||||||||||||||||||||||||||||    
T  18424196 ggttcgaactccggacatcccacttattcatctttaaggtgaatttctctag 18424145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 19843391 - 19843356
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||||||    
T  19843391 acctcacttattcatctttaaggtgaatttctctag 19843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 3330244 - 3330195
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| || ||||| ||| |||||||||||||||||||||||||||||||    
T  3330244 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctcta 3330195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 33065301 - 33065224
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| |||||| | |||  ||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  33065301 ggttcgaactccgaacaccctacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 33065224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 34107555 - 34107596
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  34107555 ccggacaccccacttattcatctttaaggtgaatttctctag 34107596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 42678367 - 42678318
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| || ||||| ||| |||||||||||||||||||||||||||||||    
T  42678367 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctcta 42678318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 6270498 - 6270533
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||| |||||||||||||||||||||||    
T  6270498 acctcacttatttatctttaaggtgaatttctctag 6270533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 37886249 - 37886206
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||||| ||||||||||||||||||||  |||||||||||    
T  37886249 cacttattcacctttaaggtgaatttctctaaccgttagactac 37886206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 41750017 - 41750048
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  41750017 cacttattcatctttaaggtgaatttctctag 41750048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 6866569 - 6866627
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    ||||| |||||||||||| ||||||||||||||||||| ||| |  |||||||| ||||    
T  6866569 ccggacacctcacttatttatctttaaggtgaatttctttagccagtagactacttgac 6866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 20375664 - 20375694
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  20375664 cacttattcatctttaaggtgaatttctcta 20375694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 20435852 - 20435882
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  20435852 cacttattcatctttaaggtgaatttctcta 20435882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 35710195 - 35710165
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  35710195 cacttattcatctttaaggtgaatttctcta 35710165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 43027229 - 43027278
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    ||||||| ||||||||||||||||||||| |  |||||||| ||||||||    
T  43027229 ttattcacctttaaggtgaatttctctagccactagactacttgaccaaa 43027278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 3402726 - 3402698
Alignment:
Q  70 cctcacttattcatctttaaggtgaattt 98  Q
    |||||||||||||||||||||||||||||    
T  3402726 cctcacttattcatctttaaggtgaattt 3402698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 37592246 - 37592198
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||||| | ||||||||||||||||||||| || |||||||| ||||    
T  37592246 cacttatttacctttaaggtgaatttctctagccgctagactacttgac 37592198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 42208967 - 42209020
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtc 106  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  42208967 ggttcgaactccggacacctcacttattcatctttaaggtgaatttctctagtc 42209020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 38503301 - 38503224
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  |||||||| |||||||| ||||    
T  38503301 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccaatagactacttgaccaaaaaaaa 38503224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 31250198 - 31250249
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  31250198 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 31250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 43227917 - 43227968
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  43227917 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 43227968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 16965815 - 16965873
Alignment:
Q  72 tcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||||||| |||||||| |||||||||||||| | ||||||||| |||||||| ||||    
T  16965815 tcacttatttatctttaatgtgaatttctctagccattagactacttgaccaaaaaaaa 16965873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 930962 - 930905
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||| |||||||||||||||||||  || ||||| |||||||| ||||    
T  930962 cacttattcatcttaaaggtgaatttctctagtcactaaactacttgaccaaaaaaaa 930905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 3294157 - 3294202
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  3294157 ttattcatctttaaggtgaatttctatagtcgctagactacttgac 3294202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 5039731 - 5039799
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||| ||| |||| ||| |||||||||||||||||||| ||||||||||| |  |||||||| ||||    
T  5039731 ggttcgaacttcggacaccccacttattcatctttaaggtaaatttctctagccactagactacttgac 5039799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 33545409 - 33545354
Alignment:
Q  75 cttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  33545409 cttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 33545354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 4395872 - 4395844
Alignment:
Q  76 ttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||||||||||||||||||||    
T  4395872 ttattcatctttaaggtgaatttctctag 4395844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 12375439 - 12375400
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  12375439 cggacacctcacttattcat-tttaaggtgaatttctctag 12375400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 15470642 - 15470614
Alignment:
Q  76 ttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||||||||||||||||||||    
T  15470642 ttattcatctttaaggtgaatttctctag 15470614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 15696274 - 15696313
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  15696274 cggacacctcacttattcat-tttaaggtgaatttctctag 15696313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 17087163 - 17087191
Alignment:
Q  70 cctcacttattcatctttaaggtgaattt 98  Q
    |||||||||||||||||||||||||||||    
T  17087163 cctcacttattcatctttaaggtgaattt 17087191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 34729532 - 34729572
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| ||| |||||||||| ||||||||||||||||||||    
T  34729532 ccggacaccccacttattcacctttaaggtgaatttctcta 34729572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 46283173 - 46283250
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||    
T  46283173 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagtcactagactacttgaccaaaaaaaa 46283250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 48404214 - 48404134
Alignment:
Q  20 taagagataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttct 100  Q
    |||||||||||||||||||| | || | |  | |||||| || ||||| ||||||||||||||||||||||||||||||||    
T  48404214 taagagataatgtataatatgtgtaggtgtcggggttcgaaccccggacacctcacttattcatctttaaggtgaatttct 48404134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 56555619 - 56555676
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||| ||||||||||||||||||||| |||||| |||| |||||||| ||||    
T  56555619 cacttattcacctttaaggtgaatttctctagccgttaggctacctgaccaaaaaaaa 56555676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 11491262 - 11491191
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    ||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  ||| |||| ||||||||    
T  11491262 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaa 11491191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 21200581 - 21200643
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||| |||||||  ||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  21200581 ggttcgaactccggtcaccccacttattca-ctttaaggtgaatttctctagccgttagactac 21200643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 40407004 - 40406953
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  40407004 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 40406953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 22096435 - 22096386
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctct 102  Q
    |||||| |||||||| ||| ||||||||||| ||||||||||||||||||    
T  22096435 ggttcgaactccggacaccccacttattcatttttaaggtgaatttctct 22096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 43084513 - 43084549
Alignment:
Q  68 tacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||||||||||||||||||||    
T  43084513 taccccacttattcatctttaaggtgaatttctctag 43084549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 2931135 - 2931166
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  2931135 cacttattcatctttaaggtgaatttctctag 2931166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 16556522 - 16556553
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  16556522 cacttattcatctttaaggtgaatttctctag 16556553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 25104391 - 25104426
Alignment:
Q  66 gatacctcacttattcatctttaaggtgaatttctc 101  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25104391 gatacctcatttattcatctttaaggtgaatttctc 25104426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 37889650 - 37889599
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||||||||||||||  ||||||||||||||||||||    
T  37889650 ggttcgaaccccggacacctcacttattcacttttaaggtgaatttctctag 37889599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 42154617 - 42154668
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| || ||||||| |||||||||||||||||||||||||    
T  42154617 ggttcgaaccccggacacttcacttaatcatctttaaggtgaatttctctag 42154668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 43362212 - 43362165
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttct 100  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||    
T  43362212 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttct 43362165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 45355742 - 45355711
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  45355742 cacttattcatctttaaggtgaatttctctag 45355711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 45369483 - 45369452
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  45369483 cacttattcatctttaaggtgaatttctctag 45369452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 45847970 - 45847923
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttct 100  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||    
T  45847970 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttct 45847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 49607621 - 49607664
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||||| ||||||||||||||||||||| || ||||||||    
T  49607621 cacttattcacctttaaggtgaatttctctagccgatagactac 49607664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 36993102 - 36993143
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||| ||| || |||||||||||||||||||||||||||||    
T  36993102 ccggacaccccaattattcatctttaaggtgaatttctctag 36993143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 37574343 - 37574400
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||| ||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  37574343 cacttattcacctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 37574400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 38690717 - 38690794
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||  ||||||||||||||||||||| || ||| |||| | |||||| ||||    
T  38690717 ggttcgaaccccggacaccccacttattctcctttaaggtgaatttctctagccgctaggctacttaaccaaaaaaaa 38690794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 13210191 - 13210152
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  13210191 cggacacctcacttattcat-tttaaggtgaatttctctag 13210152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 50815758 - 50815830
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||| || ||||| ||| ||| |||||||||| ||||||||||||||||| |  ||| |||| ||||||||    
T  50815758 ggttcgaaccccggacaccccacatattcatcttaaaggtgaatttctctagccactaggctacttgaccaaa 50815830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 5641734 - 5641657
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| |||||||| ||| |||||||||| ||||||||||||||||||||| || |||||||| |||| ||| ||||    
T  5641734 ggttcgaactccggacaccccacttattcacctttaaggtgaatttctctagccgctagactacttgacaaaaaaaaa 5641657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 17217010 - 17217060
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||    
T  17217010 gttcgaactccggacaccccacttattcatctttaaggtgaatttctctag 17217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 6228304 - 6228227
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  6228304 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 6228227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 18903411 - 18903334
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  18903411 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 18903334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 5948938 - 5948973
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||||||    
T  5948938 acctcacttattcatctttaaggtgaatttctctag 5948973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 20415606 - 20415555
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  20415606 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 20415555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 32344690 - 32344769
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaata 132  Q
    |||||| |||||||| ||| |||||||||| |||||| |||||||||  ||| ||||||||||| | |||||| ||||||    
T  32344690 ggttcgaactccggacaccccacttattcacctttaaagtgaatttccttagccgttagactacttaaccaaaaaaaata 32344769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 7164765 - 7164817
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||| ||||||||||||||||||||| || |||||||| ||| ||||    
T  7164765 cacttattcacctttaaggtgaatttctctagccgctagactacttgaacaaa 7164817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 1128433 - 1128383
Alignment:
Q  80 tcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||||||||||  |||||||| |||| ||| ||||    
T  1128433 tcatctttaaggtgaatttctctagtcactagactacttgacaaaaaaaaa 1128383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 3974512 - 3974542
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  3974512 cacttattcatctttaaggtgaatttctcta 3974542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 4854350 - 4854300
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    |||||| || ||||| ||| |||||||||||||||||||| ||||||||||    
T  4854350 ggttcgaaccccggacaccccacttattcatctttaaggtaaatttctcta 4854300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 3200104 - 3200076
Alignment:
Q  76 ttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||||||||||||||||||||    
T  3200104 ttattcatctttaaggtgaatttctctag 3200076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 15717040 - 15717001
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  15717040 cggacacctcacttattcat-tttaaggtgaatttctctag 15717001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 29322000 - 29321952
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||||| ||||||||||||||||||||||| |  |||||||| ||||    
T  29322000 cacttatttatctttaaggtgaatttctctagccactagactacttgac 29321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 11483664 - 11483741
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||    |||||||| |||||||| ||||    
T  11483664 ggttcgaactccggacaccccacttattcatctttaaggtgaatttctctagcaactagactacttgaccaaaaaaaa 11483741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 39739325 - 39739402
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||||||| |  |||||||| |||| ||| ||||    
T  39739325 ggttcgaaccccggacacctcacttattcatctttaaggtgaatttctctagccactagactacttgacaaaaaaaaa 39739402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 29645871 - 29645794
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  |||||||| |||| ||| ||||    
T  29645871 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactagactacttgacaaaaaaaaa 29645794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 47864687 - 47864764
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  47864687 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 47864764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 38668199 - 38668251
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||||||||||||||||||||||||| |  |||||||| ||||||||    
T  38668199 cacttattcatctttaaggtgaatttctctagccactagactacttgaccaaa 38668251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 27471520 - 27471623
Alignment:
Q  18 ggtaagagataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactaca 117  Q
    |||||| ||||||| ||||||| || | | | || |||||| || ||||| ||| |||||||||||||||||||| ||||||||||| |  ||||||||     
T  27471520 ggtaagggataatgcataatatgtacaggggttggggttcgaaccccggacaccccacttattcatctttaaggtaaatttctctagccactagactact 27471619  T
Q  118 tgac 121  Q
    ||||    
T  27471620 tgac 27471623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 50381775 - 50381842
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| ||| |||||||||||||||||||||||||||||||| | |||| || | |||||||| ||||    
T  50381775 ccggacaccccacttattcatctttaaggtgaatttctctagccattaggctgcttgaccaaaaaaaa 50381842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 1102720 - 1102663
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||| ||||||||||||||||||||| || ||| |||| |||||||| ||||    
T  1102720 cacttattcacctttaaggtgaatttctctagccgctaggctacttgaccaaaaaaaa 1102663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 22602227 - 22602170
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  22602227 cacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 22602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 24651188 - 24651225
Alignment:
Q  66 gatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24651188 gatacctcacttattcacctttaaggtgaatttctcta 24651225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 31435525 - 31435468
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||||||||||||||| |  |||||||| |||| ||| ||||    
T  31435525 cacttattcatctttaaggtgaatttctctagccactagactacttgacaaaaaaaaa 31435468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 30693289 - 30693354
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||| |||| ||||  |||||||||||||||||| ||| |||| ||| ||||    
T  30693289 ccggatacctcacttattcacctttgaggt--atttctctagtcgttagattacttgacaaaaaaaaa 30693354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 33528229 - 33528177
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||||||||||||||||||||||||| |  ||| |||| ||||||||    
T  33528229 cacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaa 33528177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 34225264 - 34225316
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||||||||||| ||||||||||||||||||  | | ||||||||||||||    
T  34225264 acctcacttattcacctttaaggtgaatttctccggccattagactacatgac 34225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 8931011 - 8930944
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| ||| |||||||||| |||||| |||||||||||||| || ||| |||| |||||||| ||||    
T  8931011 ccggacaccccacttattcacctttaaagtgaatttctctagccgctaggctacttgaccaaaaaaaa 8930944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 27394568 - 27394635
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| ||| |||||||||| ||||||||||||||||||||| || ||| |||| |||| ||| ||||    
T  27394568 ccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgacaaaaaaaaa 27394635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 40412338 - 40412397
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaata 132  Q
    |||||||||| |||||| |||||||||||||  ||||||| ||| |||||||| ||||||    
T  40412338 cacttattcacctttaaagtgaatttctctaaccgttagagtacttgaccaaaaaaaata 40412397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 49429511 - 49429562
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| |||||||||| |||||||||||||||||||||    
T  49429511 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctag 49429562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 9738427 - 9738485
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaat 131  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| |||| ||| |||||    
T  9738427 cacttattcatctttaaggtgaatttctttagccgctagattacttgacaaaaaaaaat 9738485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 29226397 - 29226427
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  29226397 cacttattcatctttaaggtgaatttctcta 29226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 50688891 - 50688941
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    |||||| | |||||||| | ||||||||||||||||| |||||||||||||    
T  50688891 ggttcgaattccggatatcccacttattcatctttaaagtgaatttctcta 50688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 54457171 - 54457281
Alignment:
Q  20 taagagataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatg 119  Q
    |||||||||||| ||||| ||| || ||| || ||||   || ||||| ||| || ||||||| ||||||||||||||||||||| || ||| |||| ||    
T  54457171 taagagataatgcataatttatgtaggagctggggtttaaaccccggacaccccatttattcacctttaaggtgaatttctctagccgctaggctacttg 54457270  T
Q  120 accaaacaaaa 130  Q
    || ||| ||||    
T  54457271 acaaaaaaaaa 54457281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 985953 - 985912
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  985953 ccggacaccccacttattcatcttaaaggtgaatttctctag 985912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 43897673 - 43897722
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgacc 122  Q
    |||||||||| ||||||||||||||||||||  |||||| |||| |||||    
T  43897673 cacttattcacctttaaggtgaatttctctaaccgttaggctacttgacc 43897722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 45431678 - 45431755
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||| |||||||||||||||| |||| || ||| |||| | |||||| ||||    
T  45431678 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttccctagccgctaggctacttaaccaaaaaaaa 45431755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 30162724 - 30162763
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  30162724 cggacacctcacttattcat-tttaaggtgaatttctctag 30162763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 36590458 - 36590497
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  36590458 cggacacctcacttattcat-tttaaggtgaatttctctag 36590497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 44062066 - 44062018
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||||||||||||||||||||| ||||||| |  |||||||| ||||    
T  44062066 cacttattcatctttaaggtgaatgtctctagccactagactacttgac 44062018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 50271800 - 50271848
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    |||||||||| ||||||||||||||||||||  || |||||||| ||||    
T  50271800 cacttattcacctttaaggtgaatttctctaaccgctagactacttgac 50271848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 7438672 - 7438749
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| |||||||| ||| |||||||||||||| ||||||||||||| ||| |  |||||||| |||||||| ||||    
T  7438672 ggttcgaactccggacaccccacttattcatcttaaaggtgaatttctttagccactagactacttgaccaaaaaaaa 7438749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 19424097 - 19424174
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| ||| |||||||||| ||||||||||||||||||||| || ||| |||| |||||||| ||||    
T  19424097 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgaccaaaaaaaa 19424174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 43109282 - 43109205
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| |||||| ||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  43109282 ggttcgaaccccggacacctcatttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 43109205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 16985979 - 16985928
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||||    
T  16985979 ggttcgaaccccggacacctaacttattcatctttaaggtgaatttctctag 16985928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 24134668 - 24134617
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  24134668 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 24134617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 25031541 - 25031490
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| | |||||| ||| ||||||||||||||||||||||||||||||||    
T  25031541 ggttcgaattccggacaccccacttattcatctttaaggtgaatttctctag 25031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 27054763 - 27054798
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||||||    
T  27054763 acctcacttattcatctttaaggtgaatttctctag 27054798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 35309795 - 35309838
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  35309795 cacttattcatctttaaggtgaatttctttagtcgttaaactac 35309838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 40061494 - 40061545
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| |||||||| ||| ||||||||||||||||||||| ||||||||||    
T  40061494 ggttcgaactccggacaccccacttattcatctttaaggtggatttctctag 40061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 15417850 - 15417784
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  ||| |||| |||||||| ||||    
T  15417850 cggacaccccacttattcatctttaagatgaatttctctagtcactaggctacttgaccaaaaaaaa 15417784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 42946501 - 42946439
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    ||||| ||| |||||||||| ||| ||||||||||||||||| |||||| |||| ||||||||    
T  42946501 ccggacaccccacttattcaccttaaaggtgaatttctctagccgttaggctacttgaccaaa 42946439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 3347727 - 3347694
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtc 106  Q
    ||||||||||||||||||||||||||||||||||    
T  3347727 cacttattcatctttaaggtgaatttctctagtc 3347694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 29332345 - 29332406
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaa 124  Q
    ||||| ||| |||||||||| ||||||||||||||||||||| || ||| |||| |||||||    
T  29332345 ccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgaccaa 29332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 34702357 - 34702280
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||| || ||||| |||||||||||||||||||||| ||||||||| ||| |  |||||||| |||| ||| ||||    
T  34702357 ggttcgaaccccggacacctcacttattcatctttaagatgaatttctttagccactagactacttgacaaaaaaaaa 34702280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 29936724 - 29936648
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| |||||||| ||| |||||||||||||| || |||||||||||||| | |||| |||| ||| |||| ||||    
T  29936724 gttcgaactccggacaccccacttattcatcttaaaagtgaatttctctagccattaggctacttgaacaaaaaaaa 29936648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 35308469 - 35308509
Alignment:
Q  62 tccggatacctcacttattcatctttaaggtgaatttctct 102  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  35308469 tccggacacctcacttatttatctttaaggtgaatttctct 35308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 50065072 - 50065112
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  50065072 cggacaccccacttattcatctttaaggtgaatttctctag 50065112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 10123077 - 10123046
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  10123077 cacttattcatctttaaggtgaatttctctag 10123046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 14262765 - 14262714
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| |||  |||||||||||||||||||||||||||||||    
T  14262765 ggttcgaaccccggacaccctacttattcatctttaaggtgaatttctctag 14262714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 50011578 - 50011609
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  50011578 cacttattcatctttaaggtgaatttctctag 50011609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 4684256 - 4684170
Alignment:
Q  18 ggtaagagataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| ||||||||| ||||||| || | |  | |||||| | | |||||||| || |||||||||||||||||||||| ||||||    
T  4684256 ggtaagggataatgtacaatatatgtaggggtcggggttcgaagttcggataccccatttattcatctttaaggtgaattactctag 4684170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 49620033 - 49620095
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| |  ||| |||| ||||||||    
T  49620033 ccggacaccccacttattcatctttaaagtgaatttctctagccactaggctacttgaccaaa 49620095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 50302874 - 50302844
Alignment:
Q  74 acttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||||||||||||||||||||||    
T  50302874 acttattcatctttaaggtgaatttctctag 50302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 12148597 - 12148568
Alignment:
Q  73 cacttattcatctttaaggtgaatttctct 102  Q
    ||||||||||||||||||||||||||||||    
T  12148597 cacttattcatctttaaggtgaatttctct 12148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 15550938 - 15550967
Alignment:
Q  71 ctcacttattcatctttaaggtgaatttct 100  Q
    ||||||||||||||||||||||||||||||    
T  15550938 ctcacttattcatctttaaggtgaatttct 15550967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 49239881 - 49239840
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||| ||| |||||||||||||||||||| |||||||||||    
T  49239881 ccggacaccccacttattcatctttaaggtaaatttctctag 49239840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 8893931 - 8893959
Alignment:
Q  73 cacttattcatctttaaggtgaatttctc 101  Q
    |||||||||||||||||||||||||||||    
T  8893931 cacttattcatctttaaggtgaatttctc 8893959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 12973315 - 12973243
Alignment:
Q  60 actccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaata 132  Q
    ||||| || ||| |||||||||||||||||||| ||||||| ||| |  |||||||| |||| ||| ||||||    
T  12973315 actcctgacaccccacttattcatctttaaggtaaatttctttagccactagactacttgacaaaaaaaaata 12973243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 35195635 - 35195583
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||| ||||||||| ||||||||||| || ||| |||| ||||||||    
T  35195635 cacttattcacctttaaggtaaatttctctagccgctaggctacttgaccaaa 35195583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 10201278 - 10201370
Alignment:
Q  18 ggtaagagataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgtta 110  Q
    |||||||||||||| ||||||||| || | |  | |||||| || ||||| |||||| ||||||| |||||| |||||||||||||| |||||    
T  10201278 ggtaagagataatgcataatatatgtaggggtcggggttcgaaccccggacacctcatttattcacctttaaagtgaatttctctagccgtta 10201370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 43413910 - 43413853
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  43413910 cacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 43413853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 280018 - 279978
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  280018 ttattcatttttaaggtgaatttctctagtcgctagactac 279978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 635834 - 635874
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  635834 ttattcatttttaaggtgaatttctctagtcgctagactac 635874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 821637 - 821677
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactac 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  821637 ttattcatttttaaggtgaatttctctagtcgctagactac 821677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 1032641 - 1032672
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  1032641 cacttattcatctttaaggtgaatttctctag 1032672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 4259930 - 4259961
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  4259930 cacttattcatctttaaggtgaatttctctag 4259961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 11052608 - 11052577
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  11052608 cacttattcatctttaaggtgaatttctctag 11052577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 19957365 - 19957314
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| |||||||||| |||||||||||||||||||||    
T  19957365 ggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctag 19957314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 38289259 - 38289228
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  38289259 cacttattcatctttaaggtgaatttctctag 38289228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 41454871 - 41454820
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||| ||||||||||||||    
T  41454871 ggttcgaaccccggacaccccacttattcatctttaatgtgaatttctctag 41454820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 38064048 - 38064078
Alignment:
Q  73 cacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||    
T  38064048 cacttattcatctttaaggtgaatttctcta 38064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 44828457 - 44828399
Alignment:
Q  73 cacttattcatcttt-aaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| ||||    
T  44828457 cacttattcatcttttaaggtgaatttctttagccattagactacttgaccaaaaaaaa 44828399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 3728261 - 3728224
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctc 101  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  3728261 cggacacctcacttattcacctttaaggtgaatttctc 3728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 39104677 - 39104734
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||||||||||||||||||| |||||||||| |  |||||||| |||| ||| ||||    
T  39104677 cacttattcatctttaaggtggatttctctagccactagactacttgacaaaaaaaaa 39104734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 44010454 - 44010421
Alignment:
Q  70 cctcacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||| |||||||||    
T  44010454 cctcacttattcatctttaaggtggatttctcta 44010421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 13906653 - 13906614
Alignment:
Q  64 cggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  13906653 cggacacctcacttattcat-tttaaggtgaatttctctag 13906614  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 38402735 - 38402786
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctctagtcgttagactacatgac 121  Q
    ||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||    
T  38402735 acctcacttattcat-tttaaggtaaatttctttagccgttagactacttgac 38402786  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 419763 - 419814
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  419763 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 419814  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 14707343 - 14707414
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaa 124  Q
    |||||| || ||||| ||| |||||||||| |||||  |||||||||||||| ||||||||||| |||||||    
T  14707343 ggttcgaaccccggacaccccacttattcacctttatagtgaatttctctagccgttagactacttgaccaa 14707414  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 40273872 - 40273923
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||    
T  40273872 ggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctag 40273923  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 48433744 - 48433677
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||| ||| |||||||||||||||||||||||||||||||| |  ||| |||| |||||||| ||||    
T  48433744 ccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaaaaaaa 48433677  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 20529957 - 20530003
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctctagtcgtt 109  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  20529957 ccggacaccccacttattcacctttaaggtgaatttctctagtcgtt 20530003  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 23602326 - 23602395
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgacca 123  Q
    ||||| || ||||| |||||||||||||| ||||||||||||||||| ||| |  |||||||| ||||||    
T  23602326 gttcgaaccccggacacctcacttattcacctttaaggtgaatttctttagccactagactacttgacca 23602395  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 25770114 - 25770037
Alignment:
Q  25 gataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctct 102  Q
    ||||||||||||||||| |||||   | |||||| |||||  | ||| ||||||||||||||||| ||||||||||||    
T  25770114 gataatgtataatatatgtaagaaccgaggttcgaactccaaacaccccacttattcatctttaaagtgaatttctct 25770037  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 25775685 - 25775608
Alignment:
Q  25 gataatgtataatatatataagaggtgtggttcgtactccggatacctcacttattcatctttaaggtgaatttctct 102  Q
    |||||||||||||||||  ||||   | |||||| |||||  | ||| ||||||||||||||||||||||||||||||    
T  25775685 gataatgtataatatatgcaagaaccgaggttcgaactccaaacaccccacttattcatctttaaggtgaatttctct 25775608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 4956116 - 4956064
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||||||||||||||||||||||||| |  ||| |||| ||||||||    
T  4956116 cacttattcatctttaaggtgaatttctctagccactaggctacttgaccaaa 4956064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 5228141 - 5228193
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||||||| ||||||||||||||||||||| || ||| |||| ||||||||    
T  5228141 cacttattcacctttaaggtgaatttctctagccgctaggctacttgaccaaa 5228193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 18128931 - 18128899
Alignment:
Q  71 ctcacttattcatctttaaggtgaatttctcta 103  Q
    |||||||||||||||||||||||||||||||||    
T  18128931 ctcacttattcatctttaaggtgaatttctcta 18128899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 33248846 - 33248774
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaa 125  Q
    |||||| || ||||| |||  ||||||||||||||||||||||||||| | |||  |||||||| ||||||||    
T  33248846 ggttcgaaccccggacaccctacttattcatctttaaggtgaatttctttcgtcactagactacttgaccaaa 33248774  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 37918741 - 37918781
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  37918741 ccggacacctcacttattcatcttttaggtgaatttctcta 37918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 12166153 - 12166184
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  12166153 cacttattcatctttaaggtgaatttctctag 12166184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 31793519 - 31793570
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctctag 104  Q
    |||||| || ||||| ||| ||||||||||||||||||||| ||||||||||    
T  31793519 ggttcgaaccccggacaccccacttattcatctttaaggtggatttctctag 31793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 43440760 - 43440791
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  43440760 cacttattcatctttaaggtgaatttctctag 43440791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 48619867 - 48619898
Alignment:
Q  73 cacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||||||    
T  48619867 cacttattcatctttaaggtgaatttctctag 48619898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 3889844 - 3889794
Alignment:
Q  53 ggttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    |||||| || ||||| ||| |||||||||||||| ||||||||||||||||    
T  3889844 ggttcgaaccccggacaccccacttattcatcttaaaggtgaatttctcta 3889794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 23824615 - 23824585
Alignment:
Q  74 acttattcatctttaaggtgaatttctctag 104  Q
    |||||||||||||||||||||||||||||||    
T  23824615 acttattcatctttaaggtgaatttctctag 23824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 24030059 - 24030112
Alignment:
Q  76 ttattcatctttaaggtgaatttctctagtcgttagactacatgaccaaacaaaa 130  Q
    ||||||||||||||||||||||||||||| |  |||||||| |||||||| ||||    
T  24030059 ttattcatctttaaggtgaatttctctag-ccctagactacttgaccaaaaaaaa 24030112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 28712430 - 28712471
Alignment:
Q  65 ggatacctcacttattcatctttaaggtgaatttctctagtc 106  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  28712430 ggatgcctcatttattcatctttaaagtgaatttctctagtc 28712471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 46243343 - 46243392
Alignment:
Q  54 gttcgtactccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| |||||| | ||| |||||||||| ||||||||||||||||||||    
T  46243343 gttcgaactccgaacaccccacttattcacctttaaggtgaatttctcta 46243392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 33413902 - 33413934
Alignment:
Q  72 tcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||| |||||||||||||||||    
T  33413902 tcacttattcatcttaaaggtgaatttctctag 33413934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 38378280 - 38378320
Alignment:
Q  63 ccggatacctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  38378280 ccggacaccccacttattcatttttaaggtgaatttctcta 38378320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 12689 - 12655
Alignment:
Q  70 cctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||| |||||    
T  12689 cctcacttattcatctttaaggtgaatttttctag 12655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 18373 - 18339
Alignment:
Q  70 cctcacttattcatctttaaggtgaatttctctag 104  Q
    ||||||||||||||||||||||||||||| |||||    
T  18373 cctcacttattcatctttaaggtgaatttttctag 18339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 17761 - 17727
Alignment:
Q  69 acctcacttattcatctttaaggtgaatttctcta 103  Q
    ||||||||||||||| |||||||||||||||||||    
T  17761 acctcacttattcatttttaaggtgaatttctcta 17727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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