View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_7 (Length: 467)
Name: NF18908_low_7
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 1035768 - 1036205
Alignment:
| Q |
1 |
ggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatgaatcatcatgc |
100 |
Q |
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| T |
1035768 |
ggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggatttgatgaatcatcatgc |
1035864 |
T |
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| Q |
101 |
ataagcaggtcacaatctcatcatttctac-acaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaaatgtggaccaa |
199 |
Q |
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| T |
1035865 |
ataagcaggtcacaatctcat---ttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatcatagaaaatgtggaccaa |
1035961 |
T |
|
| Q |
200 |
acactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaa-----aaacaacatgcaaatacattatt |
294 |
Q |
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| T |
1035962 |
acactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaattaaacaacatgcaaatacattatt |
1036061 |
T |
|
| Q |
295 |
tggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcctgtacaatttggga |
394 |
Q |
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| T |
1036062 |
ttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgcgttat----------tttggga |
1036151 |
T |
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| Q |
395 |
aagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttac |
448 |
Q |
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| T |
1036152 |
aagacaaagaaggtttattttgtgaaccatttttgaattcaacttggttgttac |
1036205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 448
Target Start/End: Original strand, 1010990 - 1011158
Alignment:
| Q |
280 |
tgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgc |
379 |
Q |
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| T |
1010990 |
tgcaaataccttatttggacaccagctaatggtttaggaaaccaaatggttagcatggctgcaacatttatgtatgctctcctcacaaaccgtgttatgc |
1011089 |
T |
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| Q |
380 |
ctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttac |
448 |
Q |
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| T |
1011090 |
tcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttac |
1011158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 448
Target Start/End: Complemental strand, 6939073 - 6938622
Alignment:
| Q |
4 |
aaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatgaatcatcatgcata |
103 |
Q |
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||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||| || |
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| T |
6939073 |
aaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggatttgatgaagcatcatgtgta |
6938974 |
T |
|
| Q |
104 |
agcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaaat |
190 |
Q |
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| T |
6938973 |
agcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaatatgaagaacttcatagaaggt |
6938874 |
T |
|
| Q |
191 |
gtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaacaacatgcaaatacat |
290 |
Q |
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| T |
6938873 |
gtggacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtac---ttctgctgc---aacaacatgcaaatacat |
6938780 |
T |
|
| Q |
291 |
tatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcctgtacaattt |
390 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| | ||||||| || ||||||| ||||| ||| |
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| T |
6938779 |
tatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggacgtgttatgctcgtacagttt |
6938680 |
T |
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| Q |
391 |
gggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttac |
448 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||| |
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| T |
6938679 |
ggaaaagacaaagaaggtttattttgcgaaccatttctgaattcgacttggttgttac |
6938622 |
T |
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