View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18908_low_8 (Length: 424)
Name: NF18908_low_8
Description: NF18908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18908_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 28693732 - 28693359
Alignment:
| Q |
9 |
acatcatcagatacatcactataaatagagtgtctccttacatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgatctacc |
108 |
Q |
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| T |
28693732 |
acatcatcagatacatcactataaataaagtgtctccttgcatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgatctacc |
28693633 |
T |
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| Q |
109 |
agcaccttacttatttggacaagcataccctggttcccctgtttggagaaggagcatatgactagtcgaagtgaatctattcatcagtgtgaagaccaca |
208 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
28693632 |
agcaccttacttatttggacaagcataccct----cccctgtttggagaaggagcatatgactagtcgcagtgaatctgttcatcagtgtgaagaccaca |
28693537 |
T |
|
| Q |
209 |
cctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693536 |
cctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagt |
28693437 |
T |
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| Q |
309 |
gatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcatagta |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28693436 |
gatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcagagta |
28693359 |
T |
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