View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_high_6 (Length: 330)
Name: NF18909_high_6
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 31264649 - 31264957
Alignment:
| Q |
12 |
atgagacatacatgaataattttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttttgtgcagtccccac |
111 |
Q |
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| T |
31264649 |
atgagacatacatgaataattttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttttgtgcagtccccac |
31264748 |
T |
|
| Q |
112 |
atttgaggcaatctagggaatcatgatcacatgatcaatgtcaagatgtgtagtctagtctaacattctatacctaagttagcaaaactaactaaaaccg |
211 |
Q |
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| T |
31264749 |
atttgaggcaatctagggaatcatgatcacatgatcaatgtcaagatgtgtagtctagtctaacattctatacctaagttagcaaaactaactaaaaccg |
31264848 |
T |
|
| Q |
212 |
tgatatacttcagcaccaatatttggtgaatgtgataccatgtgagnnnnnnnccccaatttgtctcatattcactatataatcac-tgatctctctgaa |
310 |
Q |
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| T |
31264849 |
tgatatacttcagcaccaatatttggtgaatgtgataccatgcgagttttttttcccaatttgtctcatattcactatataatcacgtgatctctctgaa |
31264948 |
T |
|
| Q |
311 |
tgaaatata |
319 |
Q |
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|||||||| |
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| T |
31264949 |
ggaaatata |
31264957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 39036157 - 39036253
Alignment:
| Q |
24 |
tgaataattttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttttgtgcagtccccacatttgaggcaat |
123 |
Q |
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| T |
39036157 |
tgaatgattttctatatttgacaaacttc---attccaattagtctccttctcactatttctacgcatattttctgtgcaatgcctacatctgaggcaat |
39036253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 13814526 - 13814446
Alignment:
| Q |
23 |
atgaataattttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttttgtgca |
103 |
Q |
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|||||||||||||||| |||||||| ||| ||||| | ||| |||| |||||||| ||| |||||||||| | |||||| |
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| T |
13814526 |
atgaataattttctatctttgacaaactttatcatttcaattaatttccttctcactgtttatacacatgatatatgtgca |
13814446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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