View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18909_low_1 (Length: 912)

Name: NF18909_low_1
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18909_low_1
NF18909_low_1
[»] chr5 (2 HSPs)
chr5 (1-896)||(36601361-36602231)
chr5 (599-705)||(40911930-40912034)


Alignment Details
Target: chr5 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 1 - 896
Target Start/End: Complemental strand, 36602231 - 36601361
Alignment:
Q  1 ctgggaggttcagagagggtgagtaggagcaagttttgttgcagtacatagggaaggattgttgaaagaagtgcagttcatgtactagtgctgggttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602231 ctgggaggttcagagagggtgagtaggagcaagttttgttgcagtacatagggaaggattgttgaaagaagtgcagttcatgtactagtgctgggttttg 36602132  T
Q  101 tgcattttgtagggggtatgttagtgtcgggtgggggagtgcttggggcgtttttggaatgtctatgttggcaatggaggctgtaaggatcaaaggggaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||    
T  36602131 tgcattttgtagggggtatgttagtgtcgggtgggggagtgcttggggcgtttt-ggaatgtctatgttggc--------ctgtaaggatcaaaggggaa 36602041  T
Q  201 gatggagagtcaaatttgttggcaactttctgtgaggctggtttttgcttcagggtggtttgagcttttctgccagatgcagggcgtttgtttgttgtag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||    
T  36602040 gatggagagtcaaatttgttggcaactttctgtgaggctggtttttgcttc-------------------tgccagatgcagggcgtttgtttgttgtag 36601960  T
Q  301 tggccttttcatcagattttttcaattaagagcagatttgtggttagggaatagtatttgtgcaggctggtctcaaaatggctcgggttggtatcgtttt 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36601959 tggccttttcatcagattttttcaattaagagcagatgtgtggttagggaatagtatttgtgcaggctggtctcaaaatggctcgggttggtatcatttt 36601860  T
Q  401 atcggcagcttttgcggtttgtctgttaatgcatttctgctgtgtttgtcaggtatgcttgtttgaagcatagttctgtggttctgctgggtgttctagg 500  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601859 atcggcagtttttgcggtttgtctgttaatgcatttctgctgtgtttgtcaggtatgcttgtttgaagcatagttctgtggttctgctgggtgttctagg 36601760  T
Q  501 ctgtggtgattcatgcaggtttagttgattgctagagttcctttcaatagatttagattggcttaaagttatgaagtggtacatatcnnnnnnnnatctg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  36601759 ctgtggtgattcatgcaggtttagttgattgctagagttcctttcaatagatttagattggcttaaagttatgaagtggtacatatcttttttttatctg 36601660  T
Q  601 tttgctaactttggcatttggaatggtttctctattgtgcttttgttgttatgtggcattttgtatcatctcagacattgtatctagatttttggttagc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36601659 tttgctaactttggcatttggaatggtttctctattgtgcttttgttgttatgtggcattttgtattatctcagacattgtatctagatttttggttagc 36601560  T
Q  701 acatcttgtgcctcctcttttggtaataaattc---ttaccagttcnnnnnnncgattatatacggatgtagaaaatgttatagtaatattttcaccctc 797  Q
    ||||||||||||||||||||||||||| |||||   ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  36601559 acatcttgtgcctcctcttttggtaatcaattcttgttaccagttcaaaaaaacgattatatacggatgtagaaaatgttatagtaatattttcaccctc 36601460  T
Q  798 caaaacatggcctagatctctataaacttgaacacaacatgctgctcatataatagaacaaatatttgaagacgaatacacaaaggaaaacttatatat 896  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601459 caaaacatggcctaaatctctataaacgtgaacacaacatgctgctcatataatagaacaaatatttgaagacgaatacacaaaggaaaacttatatat 36601361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 705
Target Start/End: Complemental strand, 40912034 - 40911930
Alignment:
Q  599 tgtttgctaactttggcatttggaatggtttctctattgtgcttttgttgttatgtggcattttgtatcatctcagacattgtatctagatttttggtta 698  Q
    |||||||||||||||||||||||  ||||| ||  |||||| |||  ||||| ||||||||  ||||| ||||||||  |||||||| |  | |||||||    
T  40912034 tgtttgctaactttggcatttggtttggttgcttaattgtgttttgtttgttctgtggcatcgtgtattatctcagatgttgtatcttg--tcttggtta 40911937  T
Q  699 gcacatc 705  Q
    |||||||    
T  40911936 gcacatc 40911930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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