View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18909_low_10 (Length: 313)
Name: NF18909_low_10
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_10 |
 | |
|
| [»] scaffold0015 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0015 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11755 - 11459
Alignment:
| Q |
1 |
tccaacattatgctgcttgctttaatgtctctatgaagtacctttctttcacaaccgtcgtgaagataatccaaagcttgagccacgtcacggatcacgc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11755 |
tccaacattatgttgcttgctttaatgtctctatgaagtacctttttttcacaaccatcatgaagataatccaatgcttgagccacatcacggatcacgc |
11656 |
T |
|
| Q |
101 |
cattcctagttttccaatcaagtactttcgaataatgtaattcgagtgcactcgattggttaaacaggtacttatctaagcttccattaggcatgaactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11655 |
cattcctagttttccaatcaagtactttcgaataatgtaattcgagttccctcgattggttaaacaggtacttatctaagcttccattaggcatgaactc |
11556 |
T |
|
| Q |
201 |
gtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattgttgtaacttctgctata |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11555 |
gtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattgttgtaacttctgctata |
11459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18981 - 19270
Alignment:
| Q |
1 |
tccaacattatgctgcttgctttaatgtctctatgaagtacctttctttcacaaccgtcgtgaagataatccaaagcttgagccacgtcacggatcacgc |
100 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||| | || |||||||||| | ||||||||||||||| ||||| ||||||||||| ||||| | |
|
|
| T |
18981 |
tccagcattatgttgcttgttttaatgtctctatgaagtaaccttttttcacaaccattgtgaagataatccaatgcttgcgccacgtcacgaatcacac |
19080 |
T |
|
| Q |
101 |
cattcctagttttccaatcaagtactttcgaataatgtaattcgagtgcactcgattggttaaacaggtacttatctaagcttccattaggcatgaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
19081 |
cattcctagttttccaatcaagtactttcgaataatgtgattcgagttcactcgattggttaaataggtatttgtctaaacttccatttggcatgaactc |
19180 |
T |
|
| Q |
201 |
gtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattgttgtaacttc |
290 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19181 |
ataaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttc |
19270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 37439 - 37146
Alignment:
| Q |
4 |
aacattatgctgcttgctttaatgtctctatgaagtacctttctttcacaaccgtcgtgaagataatccaaagcttgagccacgtcacggatcacgccat |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||| ||||| |||||||||| ||||| | || |
|
|
| T |
37439 |
aacattatgttgcttgctttaatgtctctatgaagtacccttttttcacaaccattgtgaagataatccaatgcttgcgccacgtcaccaatcacactat |
37340 |
T |
|
| Q |
104 |
tcctagttttccaatcaagtactttcgaataatgtaattcgagtgcactcgattggttaaacaggtacttatctaagcttccattaggcatgaactcgta |
203 |
Q |
| |
|
| || ||||||||| |||||||||| ||| ||||||| || | | | || | || ||||| ||||| || |||||||||||||| ||||||||||| || |
|
|
| T |
37339 |
ttcttgttttccaagcaagtacttttgaaaaatgtaactctaattcccttgttttattaaataggtatttgtctaagcttccatttggcatgaactcata |
37240 |
T |
|
| Q |
204 |
aacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattgttgtaacttctgctata |
297 |
Q |
| |
|
||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
37239 |
aacaaggagaagctctttattttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattgttgtaacttcggctata |
37146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University