View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_low_11 (Length: 300)
Name: NF18909_low_11
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 35043105 - 35042981
Alignment:
| Q |
157 |
tatgtgcaatgagttgaaatcaagatccctatacacaattgggattatttagtgacaaagcccctgcgaattagttatggtaaatgatctcagtggcttg |
256 |
Q |
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| T |
35043105 |
tatgttcaatgagttgaaatcaagatccctatatacaattgggattatttagtgacaaagccc-tgcgaattagttatggtaaatgttctcagtggcttg |
35043007 |
T |
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| Q |
257 |
cgagattaagatccccaaccaattag |
282 |
Q |
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| T |
35043006 |
cgagattaagatccccaaccaattag |
35042981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 35043199 - 35043112
Alignment:
| Q |
21 |
aaaatcatttatcgtttcttgctatcctttaattttgattctttagaaacattattaggtgtaacttatgcattcataatgcttataa |
108 |
Q |
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| T |
35043199 |
aaaatcatttatcgtttcttgctatcctttaattttcattatttagaaacattattaggtgtaacttatgcattcataatgcttataa |
35043112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 50847762 - 50847638
Alignment:
| Q |
113 |
tcttgttattttcacgtgaaaagaattggttgaagaaagctatatatgtgcaatgagttgaaatcaagatccctatac--acaattgggattatttagtg |
210 |
Q |
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| T |
50847762 |
tcttgttattttcacgtgaaaaaaaatggtcgaagaaacctattt----gaaattagttgaaatcaagatcccta-actgacaattgggattatttagtg |
50847668 |
T |
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| Q |
211 |
acaaagcccctgcgaattagttatggtaaa |
240 |
Q |
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| T |
50847667 |
gcaaagtccctctgaatgagttatggtaaa |
50847638 |
T |
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