View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_low_12 (Length: 271)
Name: NF18909_low_12
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_12 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 6521501 - 6521346
Alignment:
| Q |
11 |
cacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat |
110 |
Q |
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| T |
6521501 |
cacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacat |
6521402 |
T |
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| Q |
111 |
tgtataacaaataacaaacaataattatggatgtttcaagctttaaaatgtagaat |
166 |
Q |
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| T |
6521401 |
tgtataacaaataacaaacaataattatggatgtttcaagctttaaaatgtggaat |
6521346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 6507262 - 6507389
Alignment:
| Q |
39 |
gtcagtggtagctatggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattat |
138 |
Q |
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| T |
6507262 |
gtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattat |
6507361 |
T |
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| Q |
139 |
ggatgtttcaagctttaaaatgtagaat |
166 |
Q |
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| T |
6507362 |
ggatgtttcaagctttaaaatgtggaat |
6507389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 6517576 - 6517681
Alignment:
| Q |
53 |
tggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagct |
152 |
Q |
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| T |
6517576 |
tggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacattgtttaacaaataacaaacaataattattgatgtttcaagct |
6517675 |
T |
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| Q |
153 |
ttaaaa |
158 |
Q |
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|||||| |
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| T |
6517676 |
ttaaaa |
6517681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 6513135 - 6513290
Alignment:
| Q |
11 |
cacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat |
110 |
Q |
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| T |
6513135 |
cacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacat |
6513234 |
T |
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| Q |
111 |
tgtataacaaataacaaacaataattatggatgtttcaagctttaaaatgtagaat |
166 |
Q |
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| T |
6513235 |
tgtttaagaaataacagacaataattatggatgtttgaagcattaaaatgtggaat |
6513290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 6521313 - 6521225
Alignment:
| Q |
167 |
tatagattggacccggattgcctccaatagcgtactcacactatttgtcggtttgtccactctctctctttatacgtcagtagaattat |
255 |
Q |
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| T |
6521313 |
tatagattggacccggattgcctccaatagtgtactcacactatttgtcggtttgtccactctctctctttatacataagtagaattat |
6521225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 1287 - 1414
Alignment:
| Q |
39 |
gtcagtggtagctatggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattat |
138 |
Q |
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| T |
1287 |
gtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattat |
1386 |
T |
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| Q |
139 |
ggatgtttcaagctttaaaatgtagaat |
166 |
Q |
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| T |
1387 |
ggatgtttcaagctttaaaatgtggaat |
1414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 8941 - 9068
Alignment:
| Q |
39 |
gtcagtggtagctatggtgagttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattat |
138 |
Q |
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| T |
8941 |
gtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattat |
9040 |
T |
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| Q |
139 |
ggatgtttcaagctttaaaatgtagaat |
166 |
Q |
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| T |
9041 |
ggatgtttcaagctttaaaatgtggaat |
9068 |
T |
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