View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18909_low_13 (Length: 249)

Name: NF18909_low_13
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18909_low_13
NF18909_low_13
[»] chr7 (8 HSPs)
chr7 (1-232)||(41658819-41659049)
chr7 (31-232)||(13845792-13845993)
chr7 (85-199)||(18625871-18625988)
chr7 (85-199)||(18636545-18636662)
chr7 (85-199)||(18624960-18625076)
chr7 (85-199)||(18635636-18635752)
chr7 (85-199)||(18649980-18650096)
chr7 (156-199)||(18608957-18609000)
[»] chr3 (2 HSPs)
chr3 (1-200)||(14630145-14630347)
chr3 (1-200)||(14645210-14645412)
[»] chr5 (1 HSPs)
chr5 (85-195)||(38579663-38579778)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41658819 - 41659049
Alignment:
Q  1 ctaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgacgggtattgattgctccgagtcttggagaataattttgcatttgtcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  41658819 ctaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgatgggtattgattgctccgagtcttggggaataattttgcatttgtcta 41658918  T
Q  101 atctagctttgacaggttggatatattggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggcttggttaaccaaaaaatcaat 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41658919 atctagctttgacaggttggata-attggtgaggaacattagggagatttagatcagcaagaccttttacaccattggcttggttaaccaaaaaatcaat 41659017  T
Q  201 gaggtttgtaggggtggtaggcatgatttaag 232  Q
    ||||||||||||||||||||||||||||||||    
T  41659018 gaggtttgtaggggtggtaggcatgatttaag 41659049  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 13845792 - 13845993
Alignment:
Q  31 tcccagtttgtgaaatcaatgacgggtattgattgctccgagtcttggagaataattttgcatttgtctaatctagctttgacaggttggatatattggt 130  Q
    |||||||||||||||||||||| ||||||||||   |  ||||||||  | ||||||||||||||||||| |||| ||| || |||||| ||||||||||    
T  13845792 tcccagtttgtgaaatcaatgatgggtattgatatgtttgagtcttgagggataattttgcatttgtctattctaacttcgataggttgaatatattggt 13845891  T
Q  131 gaggaacattagggagatttaaatcagcaagaccttttacaccattggcttggttaaccaaaaaatcaatgaggtttgtaggggtggtaggcatgattta 230  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | |||||||||    
T  13845892 gaggaatactagggagatttagatcagtaagaccttttacaccattggcttggttaaccaaaaaatcaatgagatttgtgggagtggtggacatgattta 13845991  T
Q  231 ag 232  Q
    ||    
T  13845992 ag 13845993  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 18625988 - 18625871
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatat--tggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggctt 181  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||  |||| ||||| | | |||||||||||||||||||||| |||    
T  18625988 attttccatttgtctattcttagcttggacaggttggatatatattggtgaggaacaccagggtgatttgattaagcaagaccttttacaccattgcctt 18625889  T
Q  182 ggttaaccaaaaaatcaa 199  Q
    | ||||||||||||||||    
T  18625888 gcttaaccaaaaaatcaa 18625871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 18636662 - 18636545
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatat--tggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggctt 181  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||  |||| ||||| | | |||||||||||||||||||||| |||    
T  18636662 attttccatttgtctattcttagcttggacaggttggatatatattggtgaggaacaccagggtgatttgattaagcaagaccttttacaccattgcctt 18636563  T
Q  182 ggttaaccaaaaaatcaa 199  Q
    | ||||||||||||||||    
T  18636562 gcttaaccaaaaaatcaa 18636545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 18625076 - 18624960
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatat--tggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggctt 181  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||  |||  |||||   | ||||||||||||||||||||||||||    
T  18625076 attttccatttgtctattcttagcttggacaggttggatatatattggtgaggaacaccaggt-gatttggctaagcaagaccttttacaccattggctt 18624978  T
Q  182 ggttaaccaaaaaatcaa 199  Q
    | ||||||||||||||||    
T  18624977 gcttaaccaaaaaatcaa 18624960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 18635752 - 18635636
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatat--tggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggctt 181  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||  |||  |||||   | ||||||||||||||||||||||||||    
T  18635752 attttccatttgtctattcttagcttggacaggttggatatatattggtgaggaacaccaggt-gatttggctaagcaagaccttttacaccattggctt 18635654  T
Q  182 ggttaaccaaaaaatcaa 199  Q
    | ||||||||||||||||    
T  18635653 gcttaaccaaaaaatcaa 18635636  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 18650096 - 18649980
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatat--tggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggctt 181  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||  |||  |||||   | ||||||||||||||||||||||||||    
T  18650096 attttccatttgtctattcttagcttggacaggttggatatatattggtgaggaacaccaggt-gatttggctaagcaagaccttttacaccattggctt 18649998  T
Q  182 ggttaaccaaaaaatcaa 199  Q
    | ||||||||||||||||    
T  18649997 gcttaaccaaaaaatcaa 18649980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 18608957 - 18609000
Alignment:
Q  156 agcaagaccttttacaccattggcttggttaaccaaaaaatcaa 199  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  18608957 agcaagaccttttacaccattgccttgcttaaccaaaaaatcaa 18609000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 14630145 - 14630347
Alignment:
Q  1 ctaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgacgggtattgattgctcc---gagtcttggagaataattttgcatttgt 97  Q
    |||||||| |||||||| || | |  ||| |||||||||||||||||||||| |||||||||||| ||    ||||| ||| | ||||||||||||  ||    
T  14630145 ctaaaaattgaatcttgaacatctgggtcatcccagtttgtgaaatcaatgatgggtattgattgttcttctgagtcatgggggataattttgcatgagt 14630244  T
Q  98 ctaatctagctttgacaggttggatatattggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggcttggttaaccaaaaaatc 197  Q
    | |||||||||| || ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14630245 ccaatctagcttggataggttggatatattggtgaggaaaaatagggagatttagatcagcaagaccttttacaccattggcttggttaaccaaaaaatc 14630344  T
Q  198 aat 200  Q
    |||    
T  14630345 aat 14630347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 14645210 - 14645412
Alignment:
Q  1 ctaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgacgggtattgattgctcc---gagtcttggagaataattttgcatttgt 97  Q
    |||||||| |||||||| || | |  ||| |||||||||||||||||||||| |||||||||||| ||    ||||| ||| | ||||||||||||  ||    
T  14645210 ctaaaaattgaatcttgaacatctgggtcatcccagtttgtgaaatcaatgatgggtattgattgttcttctgagtcatgggggataattttgcatgagt 14645309  T
Q  98 ctaatctagctttgacaggttggatatattggtgaggaacattagggagatttaaatcagcaagaccttttacaccattggcttggttaaccaaaaaatc 197  Q
    | |||||||||| || ||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  14645310 ccaatctagcttggataggttggatatattggtgagggacagtagggagatttagttcagcaagaccttttacaccattggcttggtttaccaaaaaatc 14645409  T
Q  198 aat 200  Q
    |||    
T  14645410 aat 14645412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 38579663 - 38579778
Alignment:
Q  85 attttgcatttgtctaatct-agctttgacaggttggatatattggtgaggaacatta----gggagatttaaatcagcaagaccttttacaccattggc 179  Q
    ||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||  |    ||| |||||   | |||||||||||||||| |||||||    
T  38579663 attttccatttgtctattcttagcttggacaggttggatatattggtgaggaacaccaaggtgggtgatttggttaagcaagaccttttacatcattggc 38579762  T
Q  180 ttggttaaccaaaaaa 195  Q
    ||| ||||||||||||    
T  38579763 ttgcttaaccaaaaaa 38579778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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