View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_low_2 (Length: 568)
Name: NF18909_low_2
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 27096867 - 27096336
Alignment:
| Q |
1 |
gaggagataatggttgagattgaaggaatgttgggaagtgaattggatggcaatggtggaaagttgagtgatggaagttgtggattggtaggaatgctag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
27096867 |
gaggagataatggttgagattgaaggaatgttgggaagtgaattggatggaaatggtggaaagttgagagatggaagtgttggattggtaggaatgctag |
27096768 |
T |
|
| Q |
101 |
gaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgaggttgaggcaatgttggcattgaaggcaaaggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096767 |
gaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgaggttgaggcaatgttggcattgaaggcaaaggtgg |
27096668 |
T |
|
| Q |
201 |
caatgttgttgggactgaaggcaacgttggaatagaaggcaatggtggcaatgttgttggaattgaaggcaatgttggatttggcaaagtgggaatgctt |
300 |
Q |
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| T |
27096667 |
caatgttgttgggattgagggcaaag------------------gtggcaatgttgttggaattgaaggcaatgttggatttggcaaagtgggaatgttt |
27096586 |
T |
|
| Q |
301 |
ggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttgacaaggtaacaaaaagaaataatgaagtgatgaatgttttca |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||| ||||||||||| || |||||||||||||||| |
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| T |
27096585 |
ggcaaattgggttgtgtggttgtttgcaaaaggtttcgagcttctaggctcatgtttgacaaggcaacgaaaagaaataaagatgtgatgaatgttttca |
27096486 |
T |
|
| Q |
401 |
ttgaggccatgacttgatgaattgatagaactaatcaaggtgtatatttgtagaagagtgtttgatttaagattttatgagaaggaaggggatagtgttt |
500 |
Q |
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| T |
27096485 |
ttgaggccatgacttgatgaattgatagaactaatcaaggtgtatatttgtagaagagtgtttgatttgagattttatgagaaggaaggggatagtgttt |
27096386 |
T |
|
| Q |
501 |
gatcttatatagagtaagaaatatttgagggaggtattggtccagcattt |
550 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096385 |
ggtcttatatagagtaagaaatatttgagggaggtattggtccagcattt |
27096336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 27103170 - 27102756
Alignment:
| Q |
1 |
gaggagataatggttgagattgaaggaatgttgggaagtgaattggatggcaatggtggaaagttgagtgatggaagttgtggattggtaggaatgctag |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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| T |
27103170 |
gaggagataatggttgagattgaaggaaggttgggaagtgaattggatggaaatggtggaaagttgagagatggaagtgttggattggttggaatgctag |
27103071 |
T |
|
| Q |
101 |
gaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgaggttgaggcaatgttggcattgaaggcaaaggtgg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27103070 |
gaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatggaggaacattaccttgaggttgaggcaatgttggcattgaaggcaaaggtgg |
27102971 |
T |
|
| Q |
201 |
caatgttgttgggactgaaggcaacgttggaatagaaggcaatggtggcaatgttgttggaattgaaggcaatgttggatttggcaaagtgggaatgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
27102970 |
caatgttgttgggactgaaggcaacgttggaatagaaggcaatggtggcaatgttgttggaattgaaggcaatgttggttttggtaaagtgggaatgctt |
27102871 |
T |
|
| Q |
301 |
ggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttgacaaggtaacaaaaagaaataatgaagtgatgaatgttttca |
400 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| || || |||| ||||||| |
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| T |
27102870 |
ggcaaattgggttgtgtagttgtttgcaaaaggttgcgagcttctaggttcatgtttgacaaggtaacaaaaagaagtaaagatgtaatgatggttttca |
27102771 |
T |
|
| Q |
401 |
ttgaggccatgactt |
415 |
Q |
| |
|
||||||||||||||| |
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| T |
27102770 |
ttgaggccatgactt |
27102756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 524
Target Start/End: Complemental strand, 27102737 - 27102666
Alignment:
| Q |
453 |
gaagagtgtttgatttaagattttatgagaaggaaggggatagtgtttgatcttatatagagtaagaaatat |
524 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||| | | ||||||||||||||||| |||| |
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| T |
27102737 |
gaagagtgtttgatttgagattttatgagaagtaaagggatagtgctaggtcttatatagagtaagatatat |
27102666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 37187653 - 37187815
Alignment:
| Q |
11 |
tggttgagattgaaggaatgttgggaagtgaattggatg---gcaatggtggaaagttgagtgatggaagttgtgga---ttggtaggaatgctaggaag |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| || |||||||||||| |||||| ||||||| | |||| || ||||||| ||||||||| |
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| T |
37187653 |
tggttgggattgaaggaatgttgggaagtgaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaag |
37187752 |
T |
|
| Q |
105 |
tggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgagg |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
37187753 |
tggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaagatttccctgagg |
37187815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 37179970 - 37180132
Alignment:
| Q |
11 |
tggttgagattgaaggaatgttgggaagtgaattg---gatggcaatggtggaaagttgagtgatggaagttgtgga---ttggtaggaatgctaggaag |
104 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| || | |||||||||||||| |||||| ||||||| | |||| || ||||||| || ||||| |
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| T |
37179970 |
tggttgggattgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaag |
37180069 |
T |
|
| Q |
105 |
tggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgagg |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
37180070 |
tggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttgagg |
37180132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 37181767 - 37181605
Alignment:
| Q |
11 |
tggttgagattgaaggaatgttgggaagtgaattg---gatggcaatggtggaaagttgagtgatggaagttgtgga---ttggtaggaatgctaggaag |
104 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| || | |||||||||||||| |||||| ||||||| | |||| || ||||||| || ||||| |
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| T |
37181767 |
tggttgggattgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaag |
37181668 |
T |
|
| Q |
105 |
tggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgagg |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
37181667 |
tggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttgagg |
37181605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 37189884 - 37189722
Alignment:
| Q |
11 |
tggttgagattgaaggaatgttgggaagtgaattg---gatggcaatggtggaaagttgagtgatggaagttgtgga---ttggtaggaatgctaggaag |
104 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| || | |||||||||||||| |||||| ||||||| | |||| || ||||||| || ||||| |
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| T |
37189884 |
tggttgggattgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaag |
37189785 |
T |
|
| Q |
105 |
tggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttgagg |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
37189784 |
tggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttgagg |
37189722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 37180166 - 37180252
Alignment:
| Q |
273 |
tgttggatttggcaaagtgggaatgcttggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttga |
359 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||||||||| | ||||||||||| || ||||||||| |
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|
| T |
37180166 |
tgttggttttggtaaagtgggaatggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttga |
37180252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 37189688 - 37189602
Alignment:
| Q |
273 |
tgttggatttggcaaagtgggaatgcttggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttga |
359 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||||||||| | ||||||||||| || ||||||||| |
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| T |
37189688 |
tgttggttttggtaaagtgggaatggttggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgtttga |
37189602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 37181571 - 37181483
Alignment:
| Q |
273 |
tgttggatttggcaaagtgggaatgcttggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttgaca |
361 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||| ||||||||||| ||||||||||| | ||||||||||| || |||| |||||| |
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|
| T |
37181571 |
tgttggttttggtaaagtgggaatggctggtaaatttggttgtgtggtagtttgcaaaagatggcgagcttctaggctcatgcttgaca |
37181483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 37187850 - 37187949
Alignment:
| Q |
274 |
gttggatttggcaaagtgggaatgcttggcaaattgggttgtgtggttgtttgcaaaaggttgcgagcttctatgcccatgtttgacaaggtaacaaaaa |
373 |
Q |
| |
|
||||||||||| ||| |||||||| | |||||||| |||||| ||||| || ||||| | ||||||||||| || |||| |||||| ||| |||| || |
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|
| T |
37187850 |
gttggatttggtaaattgggaatgttaggcaaatttggttgt---gttgtctgtaaaagatggcgagcttctaggctcatgcttgacatggtcacaacaa |
37187946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 38704157 - 38704189
Alignment:
| Q |
83 |
gattggtaggaatgctaggaagtggtggcatag |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
38704157 |
gattggtaggaaagctaggaagtggtggcatag |
38704189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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