View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_low_3 (Length: 547)
Name: NF18909_low_3
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 6 - 531
Target Start/End: Complemental strand, 5366115 - 5365590
Alignment:
| Q |
6 |
ccaccaacagctgatttcaccttcgaattaaccggaaagtgggccaacaacatcctcctcgaaacagcacgagccatagcagnnnnnnncagcactcgtt |
105 |
Q |
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| T |
5366115 |
ccaccaacagctgatttcaccttcgaattaaccggaaggtgggccaacaacatcctcctcgaaacagcacgagccatagcagaaaaaaacagcactcgtt |
5366016 |
T |
|
| Q |
106 |
tacaacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaat |
205 |
Q |
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| T |
5366015 |
tacaacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaat |
5365916 |
T |
|
| Q |
206 |
gaccgaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaa |
305 |
Q |
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| T |
5365915 |
gaccgaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaa |
5365816 |
T |
|
| Q |
306 |
gttagtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaaca |
405 |
Q |
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| T |
5365815 |
gttagtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaaca |
5365716 |
T |
|
| Q |
406 |
cttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttc |
505 |
Q |
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| T |
5365715 |
cttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttc |
5365616 |
T |
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| Q |
506 |
tgttcaaaaagttatgaaggaaattg |
531 |
Q |
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| T |
5365615 |
tgttcaaaaagttatgaaggaaattg |
5365590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 297 - 481
Target Start/End: Original strand, 39987510 - 39987694
Alignment:
| Q |
297 |
ttccaagaagttagtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgata |
396 |
Q |
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| T |
39987510 |
ttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaacttcacataattgata |
39987609 |
T |
|
| Q |
397 |
ttagtaacacttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaac |
481 |
Q |
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| T |
39987610 |
ttagcaacacttattgcactcaatggccaacactcctcgaagcgttggccacccgctctgatgatacgcctcaccttcgtttaac |
39987694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 39987321 - 39987382
Alignment:
| Q |
108 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
169 |
Q |
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| T |
39987321 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
39987382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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