View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18909_low_4 (Length: 414)
Name: NF18909_low_4
Description: NF18909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18909_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 117828 - 117438
Alignment:
| Q |
13 |
aaaatatgtggcttcggctagctgaaaccaaggcaagacctcttggactacaactgttagatctcaacctcatatttgatacaatcaagaggtactttag |
112 |
Q |
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| T |
117828 |
aaaatatgtggcttcggctagctgaaaccaaggcaagacctcttggaccacaattgttagatctcaacctcatatttgatacaatcaagaggtactttag |
117729 |
T |
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| Q |
113 |
gatacagctgaaacccccatggattaacatgtgtataagaagacttatcctgagtgggttgacaaattaatgcattttcctagaggttataagactcctg |
212 |
Q |
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| T |
117728 |
gatacagctgaaacccccatggattaacatgtgtataagaagacttatcatgagtgggttgacaaattaatgcattttcctggaggttataagactcctg |
117629 |
T |
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| Q |
213 |
actattctacctttacccaggaagatggaaaatcaaccatggagctcattggaaaatgtacaacgtaatgtagcaagggaaa----cca-aaacgaattc |
307 |
Q |
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| T |
117628 |
actattctacctttacccgggaagatggaaaatcaaccatggagctcattggaaaatgtacaacgtaatattacgttgtacattttccacaaacgaattc |
117529 |
T |
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| Q |
308 |
cacaaacttcacttgttccctttatcgttgacatgaacatcatttacgtgatattcctgtataccaccaaactcggtaaaaacttaggcat |
398 |
Q |
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| T |
117528 |
cacaaacttcacttgttccctttatcgttgacatgaacatcatttacgtgatattcctgtataccaccaaactcggtaaaaacttaggcat |
117438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 21128930 - 21128902
Alignment:
| Q |
187 |
ttttcctagaggttataagactcctgact |
215 |
Q |
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| T |
21128930 |
ttttcctagaggttataagactcctgact |
21128902 |
T |
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