View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18910_high_4 (Length: 296)
Name: NF18910_high_4
Description: NF18910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18910_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 5374743 - 5375023
Alignment:
| Q |
16 |
catatctcaggtacttgcacaatgtaactgaagcaacgataccccaattggagaaattcctaaaaaacagtagaatatatattttgcctctacaagagta |
115 |
Q |
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| T |
5374743 |
catatctcaggtacttgcacaatgtaactgaagcaacgataccccaattggagaaattcctaaaaaacagtacaatatatattttgcctctacaagagta |
5374842 |
T |
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| Q |
116 |
agtaaaattcttgcctgtagaaacagtacacccaaatagcaacaacatatgtataacctagcaacacagtcaagcattccaatttgaggatacctatcaa |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374843 |
agtaaaattcttacctgtagaaacagtacacccaaatagcaacaacatatgtataacctagcaacacagtcaagcattccaatttgaggatacctatcaa |
5374942 |
T |
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| Q |
216 |
acaaagtgtataacaagtgcaataattccatcttcatttaca----------actataacagtcaatcctaatcctctctg |
286 |
Q |
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| T |
5374943 |
acaaagtgtataacaagtgcaataattccatcttcatttacaaccactcctgactataacagtcaatcctaatcctctctg |
5375023 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 17298938 - 17298864
Alignment:
| Q |
149 |
aaatagcaacaacatatgtataacctagcaacacagtcaagcattccaatttgaggatacctatcaaacaaagtgta |
225 |
Q |
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||||||||||||||| |||| |||||||||| || |||||||| |||||||||| |||||||||||||| |||||| |
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| T |
17298938 |
aaatagcaacaacat--gtatgacctagcaacgcaatcaagcatcccaatttgagtatacctatcaaacacagtgta |
17298864 |
T |
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