View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18910_low_1 (Length: 504)
Name: NF18910_low_1
Description: NF18910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18910_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 27771544 - 27772013
Alignment:
| Q |
15 |
ggaacttgaacattgtgtattgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaa |
114 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771544 |
ggaacttgaacatgatgtgttgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaa |
27771643 |
T |
|
| Q |
115 |
gatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactnnnnnn |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771644 |
gatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactaaaaaa |
27771743 |
T |
|
| Q |
215 |
ngcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771744 |
agcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttgg |
27771843 |
T |
|
| Q |
315 |
atttcatcaactgggtcattggtgtttcttcttgcagattctctgtgaccacaatatttagatattagagtgtaataagttagtagtaaaaaagcagtgg |
414 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27771844 |
atttcatcaactgggtcattggtgtttcttcttgaagattctctgtgaccacaatatttggatattagagtgtaataagttagtagtaaaaaagcagtgg |
27771943 |
T |
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| Q |
415 |
ctaaaactcccaaaattgcaataacaagaggagagaaatatggttttgaatcatcatcaggatattgaaa |
484 |
Q |
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| T |
27771944 |
ctaaaactcccaaaattgcaataacaagaggagaaaaatatggttttgaatcatcatcagggtattgaaa |
27772013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
190 |
Q |
| |
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||||||| |||||||||||||| | ||||||| | ||| ||||| | || |||| ||| | ||| || || |||||||| |||| ||||||||| ||||| |
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| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
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| Q |
191 |
atctgt |
196 |
Q |
| |
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||||| |
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| T |
37504177 |
ctctgt |
37504182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 12617788 - 12617922
Alignment:
| Q |
62 |
acgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatca |
161 |
Q |
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|||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| |
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| T |
12617788 |
acgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcg |
12617887 |
T |
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| Q |
162 |
tcttgaaactcacttagacaaactgaacaatctgt |
196 |
Q |
| |
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| T |
12617888 |
tcttgaaactcgtttagacaaacagaacaatctgt |
12617922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 475
Target Start/End: Original strand, 12618095 - 12618219
Alignment:
| Q |
351 |
gattctctgtgaccacaatatttagatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaga |
450 |
Q |
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||||||||| |||||||||| || ||||||| ||||| ||||||| || | ||||||| | ||||| | ||| | |||||||| ||||||||||| | |
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| T |
12618095 |
gattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaa |
12618194 |
T |
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| Q |
451 |
aatatggttttgaatcatcatcagg |
475 |
Q |
| |
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||| ||| ||||||| |||||||| |
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| T |
12618195 |
aatttggacttgaatcttcatcagg |
12618219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
190 |
Q |
| |
|
||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
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| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
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| Q |
191 |
atctg |
195 |
Q |
| |
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||||| |
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| T |
37227961 |
atctg |
37227965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
175 |
Q |
| |
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||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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