View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18910_low_2 (Length: 485)

Name: NF18910_low_2
Description: NF18910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18910_low_2
NF18910_low_2
[»] chr5 (6 HSPs)
chr5 (10-468)||(20478338-20478784)
chr5 (135-221)||(14011409-14011496)
chr5 (63-183)||(8920101-8920220)
chr5 (155-217)||(42509720-42509782)
chr5 (159-220)||(31748454-31748515)
chr5 (63-147)||(21922110-21922193)
[»] scaffold0085 (1 HSPs)
scaffold0085 (131-224)||(22742-22835)
[»] chr6 (6 HSPs)
chr6 (117-222)||(21418248-21418353)
chr6 (135-222)||(21467933-21468020)
chr6 (63-201)||(34441975-34442111)
chr6 (134-221)||(21388309-21388396)
chr6 (154-186)||(21418410-21418442)
chr6 (154-186)||(21468093-21468125)
[»] scaffold0160 (1 HSPs)
scaffold0160 (119-206)||(26499-26586)
[»] chr4 (6 HSPs)
chr4 (131-204)||(1840668-1840741)
chr4 (159-221)||(39158223-39158285)
chr4 (63-219)||(42062525-42062680)
chr4 (131-221)||(18316027-18316117)
chr4 (132-181)||(7209375-7209424)
chr4 (78-150)||(31641528-31641599)
[»] chr7 (6 HSPs)
chr7 (133-221)||(49103480-49103568)
chr7 (131-221)||(28249461-28249551)
chr7 (156-221)||(31487306-31487371)
chr7 (63-175)||(47448849-47448960)
chr7 (78-118)||(2469729-2469769)
chr7 (23-59)||(10614399-10614435)
[»] chr2 (7 HSPs)
chr2 (131-217)||(1040307-1040391)
chr2 (78-221)||(6511448-6511590)
chr2 (63-181)||(9194452-9194570)
chr2 (78-183)||(6646861-6646965)
chr2 (131-183)||(40443139-40443191)
chr2 (131-183)||(40504316-40504368)
chr2 (131-183)||(44018330-44018382)
[»] chr8 (5 HSPs)
chr8 (82-221)||(35153057-35153197)
chr8 (101-186)||(7612921-7613005)
chr8 (63-183)||(3946263-3946382)
chr8 (136-194)||(5849486-5849544)
chr8 (79-183)||(37657028-37657131)
[»] chr1 (3 HSPs)
chr1 (159-221)||(47642498-47642560)
chr1 (139-185)||(45008091-45008137)
chr1 (78-183)||(45065831-45065935)
[»] chr3 (4 HSPs)
chr3 (131-194)||(34307459-34307522)
chr3 (131-221)||(4494128-4494218)
chr3 (131-183)||(48346916-48346968)
chr3 (23-59)||(51764729-51764765)
[»] scaffold0034 (1 HSPs)
scaffold0034 (157-218)||(22694-22755)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Original strand, 20478338 - 20478784
Alignment:
Q  10 aagaaaatatatgttttttaaatgtcaagttacaaatgtgcattaactcaaccttttatgacaacctctgtgacaactttctctctcacagtcactttgt 109  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  20478338 aagaatatattttttttttaaatgtcaagttacaaatgtgcattaactcaaccttttatgacaacctctgtgacaactttctctctcataatcactttgt 20478437  T
Q  110 attcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttt 209  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  20478438 attcttacttt-ctttcttcattgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaataagttgtttcaaaaagtggtttt 20478536  T
Q  210 tcgaataacatttctttttaaatcattagcctgtgaatgacaattcccttaataatattgtgatagttttatataatctacactgtaatgcaaacagttg 309  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478537 tcgaataacatttcgttttaactcattagcctgtgaatgacaattcccttaataatattgtgatagttttatataatctacactgtaatgcaaacagttg 20478636  T
Q  310 gttgcagtgttgttaaatggtggcgccatggcgagaatgcggttatttaacaaccgcaactgccatagacagttggtgaagaaatgccgatgcctgccat 409  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||           ||||||||||||||||    
T  20478637 gttgcagtgttgttaaatggtggcaccatggcgggaatgcggttatttaacaaccgcaactgccataaacagt-----------tgccgatgcctgccat 20478725  T
Q  410 ggtggcaccataggccgcaattagacagttggactgggagtcgggaagaatgcaattag 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478726 ggtggcaccataggccgcaattagacagttggactgggagtcgggaagaatgcaattag 20478784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 14011409 - 14011496
Alignment:
Q  135 tttggtttttgtgtcagtcattacatttctttgtatattttggtt-gtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||||||||||| || ||| |||| |||||||||||||||| ||| || |||||||||  |||||||||| ||| |||||||||    
T  14011409 tttggtttttgtgtcaatctttatatttttttgtatattttggttggtcaaaagagttgtcttcaaaagtggttgttcaaataacatt 14011496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 8920101 - 8920220
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 162  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||| | |||||| |||   ||||||||||||||||| ||    | ||||||    
T  8920101 ttttgtgacaacttttgtgacaactttctctctcatactcacatcatattctca-ttttctctctctattgctttggtttttgtgccaagactcacattt 8920199  T
Q  163 ctttgtatattttggttgtcc 183  Q
    |||| ||||||||||||||||    
T  8920200 ctttctatattttggttgtcc 8920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 42509720 - 42509782
Alignment:
Q  155 ttacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataa 217  Q
    ||||||||||||| |||||||||||||| ||| |||| |||||| ||||| || ||| |||||    
T  42509720 ttacatttctttgcatattttggttgtctaataagttctctcaacaagtgattgttcaaataa 42509782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 31748454 - 31748515
Alignment:
Q  159 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacat 220  Q
    ||||||||||||| |||| ||||||||| ||||||| |||||| || || ||| ||||||||    
T  31748454 atttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaataacat 31748515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 21922193 - 21922110
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtg 147  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||||| |||||| |||   |||||||||||||||||    
T  21922193 ttttgtgacaacgtttgtgacaactttctctctcatactcacatcatattctta-ttttctctctctattgctttggtttttgtg 21922110  T

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Target: scaffold0085 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 22835 - 22742
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatttct 224  Q
    |||||||||||||||||||| ||  |||||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||| ||||||||||||    
T  22835 ttgctttggtttttgtgtcaatcgatacatttctttgtatactttggttgtccaattagttgtctgaaaaagttgttgttcaaataacatttct 22742  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 21418353 - 21418248
Alignment:
Q  117 tttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaata 216  Q
    ||||||| | ||| ||| |||||||||||||||| || ||||||||||||||||||||||||| |||||| | || | | ||||||||||| ||| ||||    
T  21418353 tttttctcttttcattgttttggtttttgtgtcaatccttacatttctttgtatattttggttatccaataaattattttaaaaagtggttattcaaata 21418254  T
Q  217 acattt 222  Q
    ||||||    
T  21418253 acattt 21418248  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 21468020 - 21467933
Alignment:
Q  135 tttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacattt 222  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||||||| | || | | |||||||| || ||| ||||||||||    
T  21468020 tttggtttttgagtcaatccttacatttctttgtatattttggttgtccaataaattattttaaaaagtgattattcaaataacattt 21467933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 34442111 - 34441975
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 162  Q
    |||||||||||| | |||||||| ||||||||||| | |||| ||||||| |  ||| | | ||  | ||||||||||||||||| |  || ||||||||    
T  34442111 ttttatgacaacttttgtgacaattttctctctcatactcacattgtattatactttatatctc--cattgctttggtttttgtgacgatccttacattt 34442014  T
Q  163 ctttgtatattttggttgtccaatgagttgtctcaaaaa 201  Q
    |||| || |||||| ||||||||| |||||||| |||||    
T  34442013 ctttatacattttgattgtccaataagttgtcttaaaaa 34441975  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 21388396 - 21388309
Alignment:
Q  134 ctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    ||||| ||||||||||| || |||||||||||| ||||||||| |||| |||| | || | | ||||||||||| ||| |||||||||    
T  21388396 ctttgatttttgtgtcaatccttacatttctttatatattttgattgtgcaataaattattttaaaaagtggttgttcaaataacatt 21388309  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 21418442 - 21418410
Alignment:
Q  154 attacatttctttgtatattttggttgtccaat 186  Q
    |||||||||||||||||||||||||||||||||    
T  21418442 attacatttctttgtatattttggttgtccaat 21418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 21468125 - 21468093
Alignment:
Q  154 attacatttctttgtatattttggttgtccaat 186  Q
    |||||||||||||||||||||||||||||||||    
T  21468125 attacatttctttgtatattttggttgtccaat 21468093  T

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Target: scaffold0160 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 26499 - 26586
Alignment:
Q  119 tttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggt 206  Q
    ||||| ||||| ||| |||| ||||| ||||| || |||||||| |||||||||||||||| |||||| |||||||| ||||||||||    
T  26499 tttctctcttcattgttttgatttttatgtcaatccttacatttgtttgtatattttggttatccaataagttgtctaaaaaagtggt 26586  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 1840668 - 1840741
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtg 204  Q
    |||||||| ||||||||||| || ||||||||||||| |||||||| ||||| ||| || ||||||||||||||    
T  1840668 ttgctttgatttttgtgtcaatccttacatttctttgcatattttgattgtctaataagatgtctcaaaaagtg 1840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 39158223 - 39158285
Alignment:
Q  159 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    ||||||||||||| |||||||||||||| ||||||| ||| || ||||| ||| |||||||||    
T  39158223 atttctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaataacatt 39158285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 42062680 - 42062525
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtc-agtcattacatt 161  Q
    |||||||||||| | | |||||||||| ||||||| | | || || |||| | ||||| || ||||| |||||||| |||||||| | || | | |||||    
T  42062680 ttttatgacaacttttatgacaactttttctctcatacttacattatattttcatttt-ctctcttcattgctttgatttttgtgcctagac-tcacatt 42062583  T
Q  162 tctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataaca 219  Q
    |||||||||||||||||||||| |  ||||||| || ||| ||||| ||| |||||||    
T  42062582 tctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataaca 42062525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 18316027 - 18316117
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||| ||||||||||| |   || ||||||||||||| |||||||||||||  |||||||  || || ||||| ||| |||||||||    
T  18316027 ttgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataacatt 18316117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 7209375 - 7209424
Alignment:
Q  132 tgctttggtttttgtgtcagtcattacatttctttgtatattttggttgt 181  Q
    |||||||||||||||| ||    |||||||||||||||||||||||||||    
T  7209375 tgctttggtttttgtggcaaaacttacatttctttgtatattttggttgt 7209424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 31641599 - 31641528
Alignment:
Q  78 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtca 150  Q
    |||||||||||||||||||||| |||| || |||| |||  ||||| ||| | |||||||| |||||||||||    
T  31641599 tgtgacaactttctctctcacactcacattatattttta-ctttctgtctccattgctttgatttttgtgtca 31641528  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 49103568 - 49103480
Alignment:
Q  133 gctttggtttttgtgtca-gtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||||||| |  ||||||||||  || ||||| ||| |||||||||    
T  49103568 gctttggtttttgtgtcaagacat-acatttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataacatt 49103480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 28249551 - 28249461
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||| ||||||||||| |  ||| ||||||||||||| ||| |||||||||  ||||||| ||| || ||||| ||| |||||||||    
T  28249551 ttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagttgtcacaagaaatggttgttcaaataacatt 28249461  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 31487306 - 31487371
Alignment:
Q  156 tacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||||||||| ||||||||||| | || ||||||| || ||||||||| ||| |||||||||    
T  31487306 tacatttctttgtaaattttggttgttccataagttgtcacataaagtggttgttcaaataacatt 31487371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 47448849 - 47448960
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 162  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |||| || |||  |||||||||   ||||||||||||||||| || |   || ||||    
T  47448849 ttttttgacaacttttgtgacaactttctctctcatactcacattgtgttttta-ctttctttctctattgctttggtttttgtgccactacctaaattt 47448947  T
Q  163 ctttgtatatttt 175  Q
    |||||||||||||    
T  47448948 ctttgtatatttt 47448960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 2469729 - 2469769
Alignment:
Q  78 tgtgacaactttctctctcacagtcactttgtattcttatt 118  Q
    |||||||||||||||||||| | |||| |||||||||||||    
T  2469729 tgtgacaactttctctctcatactcacattgtattcttatt 2469769  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 10614435 - 10614399
Alignment:
Q  23 ttttttaaatgtcaagttacaaatgtgcattaactca 59  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  10614435 ttttttaaatgtcaacttacaaatgtgcatttactca 10614399  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 1040391 - 1040307
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataa 217  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||||||| | |  |||||| |||||||||| || ||| |||||    
T  1040391 ttgctttggtttttgtgtctgtc--tatatttctttgtatattttggttgttccaaaagttgtatcaaaaagtgattgttcaaataa 1040307  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 6511590 - 6511448
Alignment:
Q  78 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 177  Q
    |||||||| ||||||||||| | | || || |||||| ||||| || |||   ||||||||||||||||||||    | |||||||||| ||||||||||    
T  6511590 tgtgacaattttctctctcatatttacattatattctcatttt-ctctctctattgctttggtttttgtgtcaagactcacatttctttctatattttgg 6511492  T
Q  178 ttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||| |  |||||||  | ||| ||||| ||| |||||||||    
T  6511491 ttgtcccacaagttgtcctacaaaatggttgttcaaataacatt 6511448  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 9194452 - 9194570
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtc-agtcattacatt 161  Q
    |||| ||||||| | | |||||||||||||||||| | |||| || |||| | ||||| || ||| | ||||||||||||||||| | || | | ||| |    
T  9194452 ttttgtgacaacttttatgacaactttctctctcatactcacattatattttcatttt-ctctctccattgctttggtttttgtgcctagacctcacaat 9194550  T
Q  162 tctttgtatattttggttgt 181  Q
    ||||||||||||||||||||    
T  9194551 tctttgtatattttggttgt 9194570  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 6646861 - 6646965
Alignment:
Q  78 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 177  Q
    |||||||||||||||||||| | |||| |  |||||| ||||| || |||   ||||||||||||||||| ||    | |||||||||| ||||||||||    
T  6646861 tgtgacaactttctctctcatactcacatcatattctcatttt-ctctctctattgctttggtttttgtgccaagactcacatttctttctatattttgg 6646959  T
Q  178 ttgtcc 183  Q
    ||||||    
T  6646960 ttgtcc 6646965  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 40443139 - 40443191
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 183  Q
    |||||||||||||||||||  |  | |||||||||| ||||||||||||||||    
T  40443139 ttgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcc 40443191  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 40504316 - 40504368
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 183  Q
    |||||||| ||||||||||| |  | |||||||||| ||||||||||||||||    
T  40504316 ttgctttgatttttgtgtcaatactaacatttctttatatattttggttgtcc 40504368  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 44018330 - 44018382
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 183  Q
    ||||||||||||||||||||     ||||||||| ||||||||||||||||||    
T  44018330 ttgctttggtttttgtgtcaaaacatacatttctatgtatattttggttgtcc 44018382  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 35153057 - 35153197
Alignment:
Q  82 acaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtata--ttttggtt 179  Q
    |||||||| | ||||| | |||| ||||||||||| ||| || ||| ||||| |||| ||||| ||||| || ||||| |||||| ||||  ||||||||    
T  35153057 acaactttttatctcatactcacgttgtattcttacttt-ctctctccgttgatttgatttttatgtcaatctttacacttctttatatatattttggtt 35153155  T
Q  180 gtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    || |||| | |||||| ||||| ||||| ||| |||||||||    
T  35153156 gttcaataacttgtctaaaaaaatggttgttcaaataacatt 35153197  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 7613005 - 7612921
Alignment:
Q  101 tcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaat 186  Q
    |||| ||||||||||| ||| ||||||  |||| ||| |||||| | ||| || |||| |||||||||||||||||||||||||||    
T  7613005 tcacattgtattcttacttt-ctttctctgttgttttagtttttctctcaatccttacgtttctttgtatattttggttgtccaat 7612921  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 3946263 - 3946382
Alignment:
Q  63 ttttatgacaacctctgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacattt 162  Q
    |||| ||||||| | |||||||||||||||||||| | |||| |  |||||| | |||||| |||   ||||||||||||||||| ||    | ||||||    
T  3946263 ttttgtgacaacttttgtgacaactttctctctcatactcacatcatattctca-ttttctctctctattgctttggtttttgtgccaagactcacattt 3946361  T
Q  163 ctttgtatattttggttgtcc 183  Q
    |||| ||||||||||||||||    
T  3946362 ctttctatattttggttgtcc 3946382  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 5849544 - 5849486
Alignment:
Q  136 ttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtc 194  Q
    ||||||||||||||| |  ||| | |||||||||||||||| ||||||||| |||||||    
T  5849544 ttggtttttgtgtcaatgcttaaacttctttgtatattttgattgtccaataagttgtc 5849486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 37657028 - 37657131
Alignment:
Q  79 gtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttggt 178  Q
    ||||||||||||||||||| | |||| |  |||||| | |||||| |||  |||||||||||||||||| ||    | |||||||||  |||||||||||    
T  37657028 gtgacaactttctctctcatactcacatcatattctca-ttttctctctctgttgctttggtttttgtgccaagactcacatttcttactatattttggt 37657126  T
Q  179 tgtcc 183  Q
    |||||    
T  37657127 tgtcc 37657131  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 47642560 - 47642498
Alignment:
Q  159 atttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    ||||||||||||| |||||||||||||  ||||||| |||||| ||||| ||| |||||||||    
T  47642560 atttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataacatt 47642498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 45008137 - 45008091
Alignment:
Q  139 gtttttgtgtcagtcattacatttctttgtatattttggttgtccaa 185  Q
    |||||||| ||| || |||||||||||||||||||||| ||||||||    
T  45008137 gtttttgtatcaatccttacatttctttgtatattttgattgtccaa 45008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 45065935 - 45065831
Alignment:
Q  78 tgtgacaactttctctctcacagtcactttgtattcttatttttctttcttcgttgctttggtttttgtgtcagtcattacatttctttgtatattttgg 177  Q
    |||||||||||||||||||| | |||| |  |||||| ||||| || |||   ||||||||||||||||||||    | |||||||||| |||||||||     
T  45065935 tgtgacaactttctctctcatactcacatcatattctcatttt-ctctctctattgctttggtttttgtgtcaagattcacatttctttctatattttga 45065837  T
Q  178 ttgtcc 183  Q
    ||||||    
T  45065836 ttgtcc 45065831  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 34307522 - 34307459
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtc 194  Q
    |||||||||||||||| ||| |   || ||||||||||||| |||||||||||||| |||||||    
T  34307522 ttgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtc 34307459  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4494218 - 4494128
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataacatt 221  Q
    |||||||| ||||||||||| |   || ||||||||||||| |||||||||||||  |||||||  || || ||||| ||| |||||||||    
T  4494218 ttgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataacatt 4494128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 48346916 - 48346968
Alignment:
Q  131 ttgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtcc 183  Q
    |||||||||||||||||||| |  | | |||||||||||||||| ||||||||    
T  48346916 ttgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtcc 48346968  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 51764729 - 51764765
Alignment:
Q  23 ttttttaaatgtcaagttacaaatgtgcattaactca 59  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  51764729 ttttttaaatgtcaacttacaaatgtgcatttactca 51764765  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 22694 - 22755
Alignment:
Q  157 acatttctttgtatattttggttgtccaatgagttgtctcaaaaagtggtttttcgaataac 218  Q
    ||||||||||||||||||||||||||| |  ||||||| || ||| ||||| ||| ||||||    
T  22694 acatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataac 22755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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