View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18910_low_3 (Length: 421)

Name: NF18910_low_3
Description: NF18910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18910_low_3
NF18910_low_3
[»] chr1 (7 HSPs)
chr1 (18-372)||(44614367-44614721)
chr1 (167-372)||(44793848-44794053)
chr1 (18-160)||(17809928-17810070)
chr1 (28-150)||(35900812-35900934)
chr1 (18-151)||(44783964-44784097)
chr1 (255-348)||(11542486-11542579)
chr1 (343-402)||(44783642-44783701)
[»] scaffold0017 (3 HSPs)
scaffold0017 (18-145)||(182323-182450)
scaffold0017 (245-345)||(171525-171625)
scaffold0017 (18-144)||(171236-171362)
[»] chr5 (2 HSPs)
chr5 (245-400)||(29505484-29505639)
chr5 (73-148)||(29505800-29505875)
[»] chr3 (1 HSPs)
chr3 (18-148)||(26729981-26730111)
[»] scaffold0061 (2 HSPs)
scaffold0061 (245-345)||(27167-27267)
scaffold0061 (18-144)||(27430-27556)
[»] chr2 (4 HSPs)
chr2 (18-60)||(29227238-29227280)
chr2 (18-60)||(29340537-29340579)
chr2 (72-148)||(29218246-29218322)
chr2 (72-148)||(29331545-29331621)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 44614367 - 44614721
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||       |||||| |||||||||||||| ||||||||||||||||||||||||    
T  44614367 catggggataggattcttcactggtttcgttggcttggtcggctcaatgttgttactaccatcttggagagaaacttactccagattcttgaacactttg 44614466  T
Q  118 atattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgtggtttattaactcaatcatgaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614467 atattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgtggtttattaactcaatcatgaat 44614566  T
Q  218 acttttaatattaaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccatta 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614567 acttttaatattgaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccatta 44614666  T
Q  318 aagacaatatcaatctcataatatatatcattgttgttttcataattaagttaat 372  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44614667 aagacaatatcaatctcataatatatatcattgttgttttcatagttaagttaat 44614721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 167 - 372
Target Start/End: Complemental strand, 44794053 - 44793848
Alignment:
Q  167 tacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaa 266  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44794053 tacttatatttctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaa 44793954  T
Q  267 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcataattaa 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44793953 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcatagttaa 44793854  T
Q  367 gttaat 372  Q
    ||||||    
T  44793853 gttaat 44793848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 17810070 - 17809928
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||       |||||||||||||||||| || ||||||||||||||||||||||||    
T  17810070 catggggcttgggttctttactggtttcgttggcttggtaggctcaatattgttactaccgtcttggagagatacttactccagattcttgaacactttg 17809971  T
Q  118 atattgaaagtcatcatgtggtggaagcagtaattctacctgg 160  Q
    |||||||||||| ||| |||||||||||||| | |||||||||    
T  17809970 atattgaaagtcttcacgtggtggaagcagtgaatctacctgg 17809928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 35900812 - 35900934
Alignment:
Q  28 ggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaag 127  Q
    |||||||||| ||| ||||||||||||| ||||||||       |||||| |||||||||||||| | ||||| |||||||||||| ||||||||||||     
T  35900812 ggattcttcattggcttcgttggcttggcaggctcaatatttttactaccatcttggagagaaacttgctccaaattcttgaacacattgatattgaaaa 35900911  T
Q  128 tcatcatgtggtggaagcagtaa 150  Q
    || || ||||| |||||||||||    
T  35900912 tcttcttgtggaggaagcagtaa 35900934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 44784097 - 44783964
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | |||||||| ||| |||||||||| ||  |||||||||       |||||| |||||||||||||| ||||||| ||||||||| |||||     
T  44784097 catggggataggattctttactagtttcgttggttttataggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatacttta 44783998  T
Q  118 atattgaaagtcatcatgtggtggaagcagtaat 151  Q
    ||||||| | ||||||| ||||||||||||||||    
T  44783997 atattgagaatcatcatctggtggaagcagtaat 44783964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 11542579 - 11542486
Alignment:
Q  255 tgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcat 348  Q
    ||||||||||||||| ||| | |||||||||||||||||||| || |||||||  |  ||| |||||||||||||||| |||||  ||||||||    
T  11542579 tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatcccataacctatatcat 11542486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 44783701 - 44783642
Alignment:
Q  343 tatcattgttgttttcataattaagttaatatgtacatatcacaagtcatgattaaatta 402  Q
    ||||||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||||    
T  44783701 tatcattgttgttttcatagttaagttaatttatacatatcacatgtcttgattaaatta 44783642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 182323 - 182450
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||       |||||| |||||||||||||| ||||||||||||||||||||||||    
T  182323 catggggataggattcttcactggtttcattggcttggtaggctcaatattgttactaccatcttggagagaaacttactccagattcttgaacactttg 182422  T
Q  118 atattgaaagtcatcatgtggtggaagc 145  Q
    ||||||||||||||||||||||||||||    
T  182423 atattgaaagtcatcatgtggtggaagc 182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 245 - 345
Target Start/End: Original strand, 171525 - 171625
Alignment:
Q  245 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 344  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  171525 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatata 171624  T
Q  345 t 345  Q
    |    
T  171625 t 171625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 171236 - 171362
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||       |||||| |||||||||||||| ||||||| ||||||||| |||||     
T  171236 catggggataggattcttcactggtttcgttggtttggtaggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatacttta 171335  T
Q  118 atattgaaagtcatcatgtggtggaag 144  Q
     |||||| | |  ||||||||||||||    
T  171336 ctattgagaattttcatgtggtggaag 171362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 400
Target Start/End: Complemental strand, 29505639 - 29505484
Alignment:
Q  245 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 344  Q
    ||||||||||||||||||||||   |||||| |||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||||||||| |    
T  29505639 tgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcataatataca 29505540  T
Q  345 tcattgttgttttcataattaagttaatatgtacatatcacaagtcatgattaaat 400  Q
    |||| || ||||||||| | |||||||| | ||||||||||| ||| |||| ||||    
T  29505539 tcatcgtagttttcatagtcaagttaatctatacatatcacatgtcctgatcaaat 29505484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 29505875 - 29505800
Alignment:
Q  73 ctaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 148  Q
    ||||| |||||||||||||| || |||| |||||||||  ||||||||||||||||  ||||||||||||||||||    
T  29505875 ctaccatcttggagagaaacctattccaaattcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt 29505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 26729981 - 26730111
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | |||||||||||| ||||||||||||||||||||||||       | || |||||||||||||||| |||||||||||||||||||| |||    
T  26729981 catggggataggattcttcactagtttcgttggcttggtaggctcaataatgttaatatcgtcttggagagaaacttactccagattcttgaacaccttg 26730080  T
Q  118 atattgaaagtcatcatgtggtggaagcagt 148  Q
    || ||||||| | ||||||||||||||||||    
T  26730081 atcttgaaagccttcatgtggtggaagcagt 26730111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 27267 - 27167
Alignment:
Q  245 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 344  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  27267 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatata 27168  T
Q  345 t 345  Q
    |    
T  27167 t 27167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 27556 - 27430
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttg 117  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||       |||||| |||||||||||||| ||||||| ||||||||| |||||     
T  27556 catggggataggattcttcactggtttcgttggtttggtaggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatacttta 27457  T
Q  118 atattgaaagtcatcatgtggtggaag 144  Q
     |||||| | |  ||||||||||||||    
T  27456 ctattgagaattttcatgtggtggaag 27430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 29227280 - 29227238
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggc 60  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  29227280 catggggctaggattcttcactggtttcgttggcttggtaggc 29227238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 29340579 - 29340537
Alignment:
Q  18 catggggtttggattcttcactggtttcgttggcttggtaggc 60  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  29340579 catggggctaggattcttcactggtttcgttggcttggtaggc 29340537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 29218322 - 29218246
Alignment:
Q  72 actaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 148  Q
    |||||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29218322 actaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29218246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 29331621 - 29331545
Alignment:
Q  72 actaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 148  Q
    |||||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29331621 actaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29331545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University